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Original Article

Identification of disease-related miRNAs based on co-expression network in spinal cord injury

, , , , , , & show all
Pages 270-276 | Received 17 Jan 2014, Accepted 30 May 2014, Published online: 14 Jul 2014

References

  • Hulsebosch CE. Recent advances in pathophysiology and treatment of spinal cord injury. Adv Physiol Educ 2002;26(4):238–55.
  • Hulsebosch CE. From discovery to clinical trials: treatment strategies for central neuropathic pain after spinal cord injury. Curr Pharm Des 2005;11(11):1411–4120.
  • Batchelor PE, Skeers P, Antonic A, et al. Systematic review and meta-analysis of therapeutic hypothermia in animal models of spinal cord injury. PloS one 2013;8(8):e71317.
  • Chen C-Z, Li L, Lodish HF, Bartel DP. MicroRNAs modulate hematopoietic lineage differentiation. Science 2004;303(5654):83–6.
  • Carthew RW, Sontheimer EJ. Origins and mechanisms of miRNAs and siRNAs. Cell 2009;136(4):642–55.
  • Krichevsky AM. MicroRNA profiling: from dark matter to white matter, or identifying new players in neurobiology. Scientific World J 2007;7:155–66.
  • Kapsimali M, Kloosterman WP, de Bruijn E, et al. MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system. Genome Biol 2007;8(8):R173.
  • Bak M, Silahtaroglu A, Møller M, et al. MicroRNA expression in the adult mouse central nervous system. Rna 2008;14(3):432–44.
  • Bhalala OG, Pan L, Sahni V, et al. microRNA-21 regulates astrocytic response following spinal cord injury. J Neurosci 2012;32(50):17935–47.
  • Iorio MV, Croce CM. MicroRNA dysregulation in cancer: diagnostics, monitoring and therapeutics. A comprehensive review. EMBO Mol Med 2012;4(3):143–59.
  • Bhayani MK, Calin GA, Lai SY. Functional relevance of miRNA* sequences in human disease. Mutat Res/Fundamental and Molecular Mechanisms of Mutagenesis 2012;731(1):14–9.
  • Kinet V, Dirkx E, De Windt LJ. Quaero muneris: Exploring microRNA function in cardiovascular disease. J Mol Cell Cardiol. 2012;52(1):1–2.
  • Small EM, Olson EN. Pervasive roles of microRNAs in cardiovascular biology. Nature 2011;469(7330):336–42.
  • Yunta M, Nieto-Díaz M, Esteban FJ, et al. MicroRNA dysregulation in the spinal cord following traumatic injury. PloS one 2012;7(4):e34534.
  • Benesty J, Chen J, Huang Y, Cohen I. Pearson correlation coefficient. Noise reduction in speech processing. Springer; 2009. 1–4.
  • Mochida K, Uehara-Yamaguchi Y, Yoshida T, et al. Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. Plant Cell Physiol 2011;52(5):785–803.
  • Shannon P, Markiel A, Ozier O, et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003;13(11):2498–504.
  • Bolaños M, Bernat EM, He B, Aviyente S. A weighted small world network measure for assessing functional connectivity. J Neurosci Methods 2013;212(1):133–142.
  • McDermott JE, Diamond DL, Corley C, et al. Topological analysis of protein co-abundance networks identifies novel host targets important for HCV infection and pathogenesis. BMC Syst Biol 2012;6(1):28.
  • Gill R, Datta S, Datta S. A statistical framework for differential network analysis from microarray data. BMC Bioinformatics 2010;11(1):95.
  • Neeper SA, Gómez-Pinilla F, Choi J, Cotman CW. Physical activity increases mRNA for brain-derived neurotrophic factor and nerve growth factor in rat brain. Brain Res 1996;726(1):49–56.
  • Dennis Jr G, Sherman BT, Hosack DA, et al. DAVID: database for annotation, visualization, and integrated discovery. Genome Biol 2003;4(5):P3.
  • Kanehisa M, editor. The KEGG database. Novartis Found Symp; 2002.
  • Harris M, Clark J, Ireland A, et al. The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 2004;32(Database issue):D258–61.
  • Conrad R, Barrier M, Ford LP. Role of miRNA and miRNA processing factors in development and disease. Birth Defects Res Part C: Embryo Today: Reviews. 2006;78(2):107–17.
  • Keklikoglou I, Koerner C, Schmidt C, et al. MicroRNA-520/373 family functions as a tumor suppressor in estrogen receptor negative breast cancer by targeting NF-κB and TGF-β signaling pathways. Oncogene 2012;31(37):4150–63.
  • Cismasiu V, Radu E, Popescu L. miR‐193 expression differentiates telocytes from other stromal cells. J Cell Mol Med 2011;15(5):1071–4.
  • Zhao J-J, Hua Y-J, Sun D-G, et al. Genome-wide microRNA profiling in human fetal nervous tissues by oligonucleotide microarray. Child's Nervous System 2006;22(11):1419–25.
  • Hu JZ, Huang JH, Zeng L, et al. Anti-apoptotic effect of microRNA-21 after contusion spinal cord injury in Rats. J Neurotrauma. 2013;30(15):1349–60.
  • Jee MK, Jung JS, Choi JI, et al. MicroRNA 486 is a potentially novel target for the treatment of spinal cord injury. Brain 2012;135(4):1237–52.
  • Jee MK, Jung JS, Im YB, et al. Silencing of miR20a is crucial for Ngn1-mediated neuroprotection in injured spinal cord. Hum Gene Ther 2012;23(5):508–20.
  • Yu YM, Gibbs KM, Davila J, et al. MicroRNA miR-133b is essential for functional recovery after spinal cord injury in adult zebrafish. Eur J Neurosci 2011;33(9):1587–97.
  • Izumi B, Nakasa T, Tanaka N, et al. MicroRNA-223 expression in neutrophils in the early phase of secondary damage after spinal cord injury. Neurosci Lett 2011;492(2):114–8.
  • Liu G, Keeler BE, Zhukareva V, Houle JD. Cycling exercise affects the expression of apoptosis-associated microRNAs after spinal cord injury in rats. Exp Neurol 2010;226(1):200–6.
  • Rau CS, Jeng JC, Jeng SF, et al. Entrapment neuropathy results in different microRNA expression patterns from denervation injury in rats. BMC Musculoskelet Disord. 2010;11:181.
  • Sehm T, Sachse C, Frenzel C, Echeverri K. miR-196 is an essential early-stage regulator of tail regeneration, upstream of key spinal cord patterning events. Dev Biol 2009;334(2):468–80.
  • LaPlaca MC, Zhang J, Raghupathi R, et al. Pharmacologic inhibition of poly (ADP-ribose) polymerase is neuroprotective following traumatic brain injury in rats. J Neurotrauma 2001;18(4):369–76.
  • Uittenbogaard M, Baxter KK, Chiaramello A. The neurogenic basic helix-loop-helix transcription factor NeuroD6 confers tolerance to oxidative stress by triggering an antioxidant response and sustaining the mitochondrial biomass. 2010;2(2):AN20100005.
  • Nakanishi K, Nakasa T, Tanaka N, et al. Responses of microRNAs 124a and 223 following spinal cord injury in mice. Spinal Cord 2009;48(3):192–6.
  • Zhu Y, Michelle Luo T, Jobin C, Young HA. Gut microbiota and probiotics in colon tumorigenesis. Cancer Lett 2011;309(2):119–27.
  • Care A, Catalucci D, Felicetti F, et al. MicroRNA-133 controls cardiac hypertrophy. Nat Med 2007;13(5):613–8.
  • Chiba Y, Misawa M. MicroRNAs and their therapeutic potential for human diseases: MiR-133a and bronchial smooth muscle hyperresponsiveness in asthma. J Pharmacol Sci 2010;114(3):264–8.
  • Conrad S, Schluesener HJ, Trautmann K, et al. Prolonged lesional expression of RhoA and RhoB following spinal cord injury. J Comp Neurol 2005;487(2):166–75.
  • Erschbamer MK, Hofstetter CP, Olson L. RhoA, RhoB, RhoC, Rac1, Cdc42, and Tc10 mRNA levels in spinal cord, sensory ganglia, and corticospinal tract neurons and long‐lasting specific changes following spinal cord injury. J Comp Neurol 2005;484(2):224–33.
  • Shin D, Howng SYB, Ptáček LJ, Fu Y-H. miR-32 and its target SLC45A3 regulate the lipid metabolism of oligodendrocytes and myelin. Neuroscience 2012;213:29–37.
  • Chun BJ, Kidd MW, Eguchi A, et al., editors. A role for miR-471 in cardiac ischemia-reperfusion injury. FASEB J 2010;24.
  • Chen J, Bernreuther C, Dihné M, Schachner M. Cell adhesion molecule l1-transfected embryonic stem cells with enhanced survival support regrowth of corticospinal tract axons in mice after spinal cord injury. J Neurotrauma 2005;22(8):896–906.
  • Hamada Y, Ikata T, Katoh S, et al. Involvement of an Intercellular Adhesion Molecule 1‐Dependent Pathway in the Pathogenesis of Secondary Changes After Spinal Cord Injury in Rats. J Neurotrauma 1996;66(4):1525–31.

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