Molecular typing of mycobacteria isolated from extrapulmonary tuberculosis patients at Debre Birhan Referral Hospital, central Ethiopia

References

• Soolingen DV. Molecular epidemiology of tuberculosis and other mycobacterial infections: main methodologies and achievements. J Int Med 2001;249:1–26.
   PubMed Web of Science ®Google Scholar
• de Viedma DG, Lorenzo G, Cardona PJ, Rodriguez NA, Gordillo S, Serrano MJ, Bouza1 E. Association between the Infectivity of Mycobacterium tuberculosis strains and their efficiency for extrarespiratory infection. J Infect Dis 2005;192:2059–65.
   PubMed Web of Science ®Google Scholar
• Noussair L, Bert F, Leflon-Guibout V, Gayet N, Nicolas-Chanoine MH. Early diagnosis of extrapulmonary tuberculosis by a new procedure combining broth culture and PCR. J Clin Microbiol 2009;47:1452–7.
   PubMed Web of Science ®Google Scholar
• Alvarado-Esquivel C, García-Corral N, Carrero-Dominguez D, Enciso-Moreno JA, Gurrola-Morales T, Portillo-Gómez L, et al. Molecular analysis of Mycobacterium isolates from extrapulmonary specimens obtained from patients in Mexico. BMC Clin Pathol 2009;9:1–6.
   PubMedGoogle Scholar
• Federal Ministry of Health of Ethiopia (FMoH). National Tuberculosis and Leprosy Control Program (NTLC). Manual, 4th ed. Ministry of Health; 2006 pp 5–57.
   Google Scholar
• Grange JM. Mycobacterium bovis infection in human beings. Tuberculosis 2001;81:7–17.
   Web of Science ®Google Scholar
• Hillemann D, Richter E, Rüsch-Gerdes S. Use of the BACTEC Mycobacteria Growth Indicator Tube 960 automated systems for recovery of mycobacteria from 9,558 extrapulmonary specimens, including urine samples. J Clin Microbiol 2006;44:4014–7.
   PubMed Web of Science ®Google Scholar
• World Health Organization. Core information for the development of immunization policy: 2002 update. WHO/V&B/ 02.28. WHO; 2002.
   Google Scholar
• World Health Organization. Global tuberculosis programme: an expanded DOTS framework for effective tuberculosis control. WHO/CDS/TB/2002.297. WHO; 2002.
   Google Scholar
• Brosch R, Gordon SV, Marmiesse M, Brodin P, Buchrieser C, Eiglmeier K, et al. A new evolutionary scenario for the Mycobacterium tuberculosis complex. Proc Natl Acad Sci U S A 2002;99:3684–9.
   PubMed Web of Science ®Google Scholar
• Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, Kuijper S, et al. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J Clin Microbiol 1997;35: 907–14.
   PubMed Web of Science ®Google Scholar
• Goyal M, Saunders NA, Embden JD, Young DB, Shaw RJ. Differentiation of Mycobacterium tuberculosis isolates by spoligotyping and IS6110 restriction fragment length polymorphism. J Clin Microbiol 1997;35:647–51.
   PubMed Web of Science ®Google Scholar
• Dale JW, Brittain D, Cataldi AA, Cousins D, Crawford JT. Spacer oligonucleotide typing of bacteria of the Mycobacterium tuberculosis complex: recommendations for standardised nomenclature. Int J Tuberc Lung Dis 2001;5: 216–9.
   PubMed Web of Science ®Google Scholar
• Shabbeer A, Cowan SL, Ozcaglar C, Rastogi N, Vandenberg SL, Yener B, Bennett KP. TB-Lineage. An online tool for classification and analysis of strains of Mycobacterium tuberculosis complex. Infect Genet Evol 2012;12:789–97.
   PubMed Web of Science ®Google Scholar
• Iwnetu R, Van Den Hombergh J, Woldeamanuel Y, Asfaw M, Gebrekirstos CH, Negussie Y, et al. Is tuberculous lymphadenitis over-diagnosed in Ethiopia? Comparative performance of diagnostic tests for mycobacterial lymphadenitis in a high-burden country. Scand J Infect Dis 2009;41:462–8.
   PubMed Web of Science ®Google Scholar
• Nava-Aguilera E, Andersson N, Harris E, Mitchell S, Hamel C, Shea B, et al. Risk factors associated with recent transmission of tuberculosis: systematic review and meta-analysis. Int J Tuberc Lung Dis 2009;13:17–26.
   PubMed Web of Science ®Google Scholar
• Bruchfeld J, Aderaye G, Berggren IP, Bjorvatn B, Ghebremichael S, Hoffner S, Lindquist L. Molecular epidemiology and drug resistance of Mycobacterium tuberculosis isolates from Ethiopian pulmonary tuberculosis patients with and without human immunodeficiency virus infection. J Clin Microbiol 2002;40:1636–43.
   PubMed Web of Science ®Google Scholar
• Kidane D, Olobo JO, Habte A. Identification of the causative organism of tuberculous lymphadenitis in Ethiopia by PCR. J Clin Microbiol 2002;40:4230–4.
   PubMed Web of Science ®Google Scholar
• Beyene D, Bergva I, Hailu E, Ashenafi S, Yamuah L, Aseffa A, et al. Identification and genotyping of the etiological agent of tuberculous lymphadenitis in Ethiopia. J Infect Dev Ctries 2009;3:412–9.
   PubMed Web of Science ®Google Scholar
• Ameni G, Aseffa A, Engers H, Young D, Gordon S, Hewinson G, Vordermeier M. High prevalence and increased severity of pathology of bovine tuberculosis in Holsteins compared to Zebu breeds under field cattle husbandry in central Ethiopia. Clin Vacc Immunol 2007;14:1356–61.
   PubMed Web of Science ®Google Scholar
• Cleaveland S, Shaw DJ, Mfinanga SG, Shirima G, Kazwala RR, Eblate E, Sharp M. Mycobacterium bovis in rural Tanzania: risk factors for infection in human and cattle populations. Tuberculosis (Edinb) 2007;87:30–43.
   PubMed Web of Science ®Google Scholar
• Koc S, Beydilli G, Tulunay G, Ocalan R, Boran N, Ozgul N, et al. Peritoneal tuberculosis mimicking advanced ovarian cancer: a retrospective review of 22 cases. Gynecol Oncol 2006;103:565–9.
   PubMed Web of Science ®Google Scholar
• Golden PM, D, Vikram HR. Extrapulmonary tuberculosis: An overview. Am Fam Phys 2005;72:1761–8.
   PubMed Web of Science ®Google Scholar
• Razanamparany VR, Ménard D, Aurégan G, Gicquel B, Chanteau S. Extrapulmonary and pulmonary tuberculosis in Antananarivo (Madagascar): high clustering rate in female patients. J Clin Microbiol 2002;40:3964–9.
   PubMed Web of Science ®Google Scholar
• Nicol MP, Sola C, February B, Rastogi N, Steyn L, Wilkinson RJ. Distribution of strain families of Mycobacterium tuberculosis causing pulmonary and extrapulmonary disease in hospitalized children in Cape Town, South Africa. J Clin Microbiol 2005;43:5779–81.
   PubMed Web of Science ®Google Scholar
• Yang Z, Kong Y, Wilson F, Foxman B, Fowler AH, Marrs CF, et al. Identification of risk factors for extrapulmonary tuberculosis. Clin Infect Dis 2004;38:199–205.
   PubMed Web of Science ®Google Scholar
• Noertjojo K, Tam CM, Chan SL, Chan-Yeung MM. Extra-pulmonary and pulmonary tuberculosis in Hong Kong. Int J Tuberc Lung Dis 2002;6:879–86.
   PubMed Web of Science ®Google Scholar
• Sebastein G, Riemer K, Van T, Kato-Maeda M, Bouke C, Jong D, et al. Variable host–pathogen compatibility in Mycobacterium tuberculosis. Proc Natl Acad Sci U S A 2006;103: 2869–73.
   PubMed Web of Science ®Google Scholar
• SITVIT database: list of all origin countries and iso-codes in the SitVit database. Pasteur Institute; 2012. Available at: http://www.pasteurguadeloupe.fr:8081/SITVITDemo/tsPaysOrigine.jsp (accessed 18 September 2012).
   Google Scholar
• Baker L, Brown T. Silent nucleotide polymorphisms and phylogeny for Mycobacterium tuberculosis. Emerg Infect Dis 2004;10:1568–77.
   PubMed Web of Science ®Google Scholar
• Dye C. Global epidemiology of tuberculosis. Lancet 2006; 367:938–40.
   PubMed Web of Science ®Google Scholar
• Kulkarni S, Sola C, Filliol I, Rastogi N, Kadival G. Spoligotyping of Mycobacterium tuberculosis isolates from patients with pulmonary tuberculosis in Mumbai, India. Res Microbiol 2005;156:588–96.
   PubMed Web of Science ®Google Scholar
• Hasan Z, Tanveer M, Kanji A, Hasan O, Ghebremichael S, Hasan R. Spoligotyping of Mycobacterium tuberculosis isolates from Pakistan reveals predominance of Central Asian Strain 1 and Beijing isolates. J Clin Microbiol 2006;44: 1763–8.
   PubMed Web of Science ®Google Scholar