mtDNA variation in the Buryat population of the Barguzin Valley: New insights into the micro-evolutionary history of the Baikal area

References

• Alekseev AN. 1996. Ancient Yakutia: The Iron Age and the medieval epoch [in Russian]. Novosibirsk: Izdatel'stvo Instituta Arkheologii i Etnografii SO RAN.
   Google Scholar
• Amory S, Crubezy E, Keyser C, Alekseev AN, Ludes B. 2006. Early influence of the steppe tribes in the peopling of Siberia. Hum Biol 78:531–549.
   PubMedGoogle Scholar
• Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N. 1999. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23:147.
   PubMed Web of Science ®Google Scholar
• Bandelt HJ, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37–48.
   PubMed Web of Science ®Google Scholar
• Bertorelle G, Excoffier L. 1998. Inferring admixture proportions from molecular data. Mol Biol Evol 15:1298–1311.
   PubMed Web of Science ®Google Scholar
• Bowles GT. 1977. Tibetans, Turks and Mongols. In: Cole S, editor, The people of Asia. Peoples of the World Series, London: Weidenfeld and Nicolson, pp. 253–280.
   Google Scholar
• Chaix R, Austerlitz F, Hegay T, Quintana-Murci L, Heyer E 2008. Genetic traces of East-to-West human expansion waves in Eurasia. Am J Phys Anthropol 136:309–317.
   PubMedGoogle Scholar
• Comas D, Calafell F, Mateu E, Perez-Lezaun A, Bosch E, Martinez-Arias R, Clarimon J, Facchini F, Fiori G, Luiselli D, Pettener D, Bertranpetit J. 1998. Trading genes along the Silk Road: mtDNA sequences and the origin of central Asian populations. Am J Hum Genet 63:1824–1838.
   PubMed Web of Science ®Google Scholar
• Derenko MV, Malyarchuk BA, Dambueva IK, Shaikhaev GO, Dorzhu CM, Nimaev DD, Zakharov IA. 2000. Mitochondrial DNA variation in two South Siberian Aboriginal populations: Implications for the genetic history of North Asia. Hum Biol 72:945–973.
   PubMedGoogle Scholar
• Derenko MV, Maliarchuk BA, Denisova GA, Dambueva IK, Kakpakov VT, Dorzhu Ch M, Luzina FA, Lotosh EA, Ondar UN, Kaplina MI, Zakharov IA. 2002. [Molecular genetic differentiation of ethnic populations in Southern and Eastern Siberia based on mitochondrial DNA polymorphism]. Genetika 38:1409–1416.
   PubMedGoogle Scholar
• Derenko MV, Grzybowski T, Malyarchuk BA, Dambueva IK, Denisova GA, Czarny J, Dorzhu CM, Kakpakov VT, Miscicka-Sliwka D, Wozniak M, Zakharov IA. 2003. Diversity of mitochondrial DNA lineages in South Siberia. Ann Hum Genet 67:391–411.
   PubMedGoogle Scholar
• Derenko M, Malyarchuk B, Grzybowski T, Denisova G, Dambueva I, Perkova M, Dorzhu C, Luzina F, Lee HK, Vanecek T, Villems R, Zakharov I. 2007. Phylogeographic analysis of mitochondrial DNA in northern Asian populations. Am J Hum Genet 81:1025–1041.
   PubMed Web of Science ®Google Scholar
• Dupanloup I, Bertorelle G. 2001. Inferring admixture proportions from molecular data: Extension to any number of parental populations. Mol Biol Evol 18:672–675.
   PubMed Web of Science ®Google Scholar
• Fedorova SA, Bermisheva MA, Villems R, Maksimova NR, Khusnutdinova EK. 2003. [Analysis of mitochondrial DNA haplotypes in yakut population]. Mol Biol Mosk 37:643–653.
   PubMedGoogle Scholar
• Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915–925.
   PubMed Web of Science ®Google Scholar
• Gabriel MN, Huffine EF, Ryan JH, Holland MM, Parsons TJ. 2001. Improved mtDNA sequence analysis of forensic remains using a ‘mini-primer set’ amplification strategy. J Forensic Sci 46:247–253.
   PubMedGoogle Scholar
• Gibert M, Perrucho M, Sevin A, Sazhinova Z, Konovalov P. 2006. Contribution of real and mythical genealogies to the reconstruction of the Buryat population history: The example of the Barguzin Valley. [In French]. Antropo 11:199–207.
   Google Scholar
• Goudet J, Raymond M, de Meeüs T, Rousset F. 1996. Testing differentiation in diploid populations. Genetics 144:1933–1940.
   PubMed Web of Science ®Google Scholar
• Hamayon R. 1990. Buryat Tribes, Clans and Ulus at the end of the XIXth century. [In French]. Etudes Mongoles 21:85–121.
   Google Scholar
• Hammer MF, Blackmer F, Garrigan D, Nachman MW, Wilder JA. 2003. Human population structure and its effects on sampling Y chromosome sequence variation. Genetics 164:1495–1509.
   PubMed Web of Science ®Google Scholar
• Harpending HC. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Hum Biol 66:591–600.
   PubMed Web of Science ®Google Scholar
• Harpending HC, Sherry ST, Rogers AR, Stoneking M. 1993. The genetic structure of ancient human populations. Curr Anthropol 34:483–496.
   Web of Science ®Google Scholar
• Helgason A, Sigureth Ardottir S, Gulcher JR, Ward R, Stefansson K. 2000. mtDNA and the origin of the Icelanders: Deciphering signals of recent population history. Am J Hum Genet 66:999–1016.
   PubMed Web of Science ®Google Scholar
• Humphrey C. 1998. Marx went away – but Karl stayed behind, updated edition of: Karl Marx collective: Economy, society, and religion in a Siberian collective farm. Ann Arbor, MI: University of Michigan Press.
   Google Scholar
• Keyser-Tracqui C, Crubezy E, Pamzsav H, Varga T, Ludes B. 2006. Population origins in Mongolia: Genetic structure analysis of ancient and modern DNA. Am J Phys Anthropol 131:272–281.
   PubMedGoogle Scholar
• Kolman CJ, Sambuughin N, Bermingham E. 1996. Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders. Genetics 142:1321–1334.
   PubMed Web of Science ®Google Scholar
• Kong QP, Yao YG, Sun C, Bandelt HJ, Zhu CL, Zhang YP. 2003. Phylogeny of East Asian Mitochondrial DNA lineages inferred from complete sequences. Am J Hum Genet 73:671–676.
   PubMed Web of Science ®Google Scholar
• Kong QP, Bandelt HJ, Sun C, Yao YG, Salas A, Achilli A, Wang CY, Zhong L, Zhu CL, Wu SF, Torroni A, Zhang YP. 2006. Updating the East Asian mtDNA phylogeny: A prerequisite for the identification of pathogenic mutations. Hum Mol Genet 15:2076–2086.
   PubMed Web of Science ®Google Scholar
• Librado P, Rozas J. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–1452.
   PubMed Web of Science ®Google Scholar
• Malyarchuk BA, Derenko MV. 2001. Mitochondrial DNA variability in Russians and Ukrainians: Implication to the origin of the Eastern Slavs. Ann Hum Genet 65:63–78.
   PubMedGoogle Scholar
• Minahan J. 2002. Buryat. Buryat Mongols; Buriats; Buryat; Burguts, Northern Mongolians. In: Encyclopedia of the stateless nations. Ethnic and national groups around the World. Westport, CT: Greenwood Press, pp. 341–347.
   Google Scholar
• Okladnikov AP. 1955. The history of the Yakut ASSR. Volume 1: Yakutia before its incorporation into the Russian State [in Russian]. Moscow Izdatel'stvo Akademii Nauk SSSR.
   Google Scholar
• Orekhov V, Poltoraus A, Zhivotovsky LA, Spitsyn V, Ivanov P, Yankovsky N. 1999. Mitochondrial DNA sequence diversity in Russians. FEBS Lett 445:197–201.
   Google Scholar
• Pakendorf B, Wiebe V, Tarskaia LA, Spitsyn VA, Soodyall H, Rodewald A, Stoneking M. 2003. Mitochondrial DNA evidence for admixed origins of central Siberian populations. Am J Phys Anthropol 120:211–224.
   PubMed Web of Science ®Google Scholar
• Pakendorf B, Novgorodov IN, Osakovskij VL, Danilova AP, Protod'jakonov AP, Stoneking M. 2006. Investigating the effects of prehistoric migrations in Siberia: Genetic variation and the origins of Yakut. Hum Genet 120:334–353.
   PubMed Web of Science ®Google Scholar
• Phillips-Krawczak C, Devor E, Zlojutro M, Moffat-Wilson K, Crawford MH. 2006. mtDNA variation in the Altai–Kizhi population of southern Siberia: A synthesis of genetic variation. Hum Biol 78:477–494.
   PubMedGoogle Scholar
• Ptak SE, Przeworski M. 2002. Evidence for population growth in humans is confounded by fine-scale population structure. Trends Genet 18:559–563.
   PubMedGoogle Scholar
• Puzyrev VP, Stepanov VA, Golubenko MV, Puzyrev KV, Maksimova NR, Khar'kov VN, Spiridonova MG and Nogovitsyna AN. 2003. [MtDNA and Y-chromosome lineages in the Yakut population]. Genetika 39:975–981.
   PubMedGoogle Scholar
• Ramos-Onsins SE, Rozas J. 2002. Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19:2092–2100.
   PubMed Web of Science ®Google Scholar
• Raymond M, Rousset F. 1995. An exact test for population differentiation. Evolution 49:1280–1283.
   PubMed Web of Science ®Google Scholar
• Ray N, Currat M, Excoffier L. 2003. Intra-deme molecular diversity in spatially expanding populations. Mol Biol Evol 20:76–86.
   PubMed Web of Science ®Google Scholar
• Redd AJ, Takezaki N, Sherry ST, Mc Garvey ST, Sofro AS, Stoneking M. 1995. Evolutionary history of the COII/tRNALys intergenic 9 base pair deletion in human mitochondrial DNAs from the Pacific. Mol Biol Evol 12:604–615.
   PubMed Web of Science ®Google Scholar
• Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9:552–569.
   PubMed Web of Science ®Google Scholar
• Sàntha I, Safonova I. 2007. The biography of a Buryat Shaman: Risks as resources of reputation for authority among hunters. 8th Annual Conference of the European Sociological Association, Glasgow, UK.
   Google Scholar
• Sántha I. 2005. Somewhere in between: Social ties on the borderland between Taiga and Steppe to the West of Lake Baikal. In: Kaster E, editor. Rebuilding identities. Pathways to reform in post-soviet Siberia. Berlin: Dietrich Reimer Verlag, pp. 173–196.
   Google Scholar
• Schneider S, Roessli D, Excoffier L. 2000. Arlequin version 2.000: A software for population genetics data analysis. Geneva: Genetics and Biometry Laboratory, University of Geneva.
   Google Scholar
• Slatkin M, Hudson RR. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555–562.
   PubMed Web of Science ®Google Scholar
• Städler T, Haubold B, Merino C, Stephan W, Pfaffelhuber P. 2009. The impact of sampling schemes on the site frequency spectrum in non-equilibrium subdivided populations. Genetics 182:205–216.
   PubMed Web of Science ®Google Scholar
• Starikovskaya EB, Sukernik RI, Derbeneva OA, Volodko NV, Ruiz-Pesini E, Torroni A, Brown MD, Lott MT, Hosseini SH, Huoponen K, Wallace DC. 2005. Mitochondrial DNA diversity in indigenous populations of the southern extent of Siberia, and the origins of Native American haplogroups. Ann Hum Genet 69:67–89.
   PubMed Web of Science ®Google Scholar
• Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 117:149–153.
   Google Scholar
• Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis MEGA. software version 4.0. Mol Biol Evol. 24:1596–1599.
   PubMed Web of Science ®Google Scholar
• Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680.
   PubMed Web of Science ®Google Scholar
• Torroni A, Schurr TG, Cabell MF, Brown MD, Neel JV, Larsen M, Smith DG, Vullo CM, Wallace DC. 1993. Asian affinities and continental radiation of the four founding Native American mtDNAs. Am J Hum Genet 53:563–590.
   PubMed Web of Science ®Google Scholar
• Torroni A, Huoponen K, Francalacci P, Petrozzi M, Morelli L, Scozzari R, Obinu D, Savontaus ML, Wallace DC. 1996. Classification of European mtDNAs from an analysis of three European populations. Genetics. 144:1835–1850.
   PubMed Web of Science ®Google Scholar
• Vigilant L, Pennington R, Harpending H, Kocher TD, Wilson AC. 1989. Mitochondrial DNA sequences in single hairs from a southern African population. Proc Natl Acad Sci USA 86:9350–9354.
   PubMed Web of Science ®Google Scholar
• Yao YG, Zhang YP. 2002. Phylogeographic analysis of mtDNA variation in four ethnic populations from Yunnan Province: New data and a reappraisal. J Hum Genet 47:311–318.
   PubMed Web of Science ®Google Scholar
• Yao YG, Kong QP, Wang CY, Zhu CL, Zhang YP. 2004. Different matrilineal contributions to genetic structure of ethnic groups in the Silk Road region in china. Mol Biol Evol 21:2265–2280.
   PubMed Web of Science ®Google Scholar