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Chronobiology International
The Journal of Biological and Medical Rhythm Research
Volume 32, 2015 - Issue 9
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Original Article

The daily rhythms of mitochondrial gene expression and oxidative stress regulation are altered by aging in the mouse liver

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Pages 1254-1263 | Received 14 Jun 2015, Accepted 18 Aug 2015, Published online: 29 Oct 2015

REFERENCES

  • Balaban RS, Nemoto S, Finkel T. (2005). Mitochondria, oxidants, and aging. Cell. 120:483–95
  • Bell EL, Guarente L. (2011). The SirT3 divining rod points to oxidative stress. Mol Cell. 42:561–8
  • Bittman EL, Kilduff TS, Kriegsfeld LJ, et al. (2013). Animal care practices in experiments on biological rhythms and sleep: Report of the Joint Task Force of the Society for Research on Biological Rhythms and the Sleep Research Society. J Am Assoc Lab Anim Sci. 52:437–43
  • Chan DC. (2012). Fusion and fission: Interlinked processes critical for mitochondrial health. Annu Rev Genet. 46:265–87
  • Cho CS, Yoon HJ, Kimb JK, et al. (2014). Circadian rhythm of hyperoxidized peroxiredoxin II is determined by hemoglobin autoxidation and the 20S proteasome in red blood cells. Proc Natl Acad Sci USA. 111:12043–8
  • Cogliati S, Frezza C, Soriano ME, et al. (2013). Mitochondrial cristae shape determines respiratory chain supercomplexes assembly and respiratory efficiency. Cell. 155:1–12
  • Eckel-Mahan KL, Patel VR, de Mateo S, et al. (2013). Reprogramming of the circadian clock by nutritional challenge. Cell. 155:1464–78
  • Finkel T, Holbrook NJ. (2000). Oxidants, oxidative stress and the biology of ageing. Nature. 408:239–47
  • Garcia J, Han D, Sancheti H, Yap LP, et al. (2010). Regulation of mitochondrial glutathione redox status and protein glutathionylation by respiratory substrates. J Biol Chem. 285:39646–54
  • Green CB, Takahashi JS, Bass J. (2008). The meter of metabolism. Cell. 134:728–42
  • Guarente L. (2008). Mitochondria – A nexus for aging, calorie restriction, and sirtuins? Cell. 132:171–6
  • Gut P, Verdin E. (2013). The nexus of chromatin regulation and intermediary metabolism. Nature. 502:489–98
  • Hekimi S, Lapointe J, Wen Y. (2011). Taking a “good” look at free radicals in the aging process. Trends Cell Biol. 21:569–76
  • Hughes ME, DiTacchio L, Hayes KR, et al. (2009). Harmonics of circadian gene transcription in mammals. PLoS Genet. 5:e1000442
  • Hughes ME, Hogenesch JB, Kornacker K. (2010). JTK_CYCLE: An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets. J Biol Rhythms. 25:372–80
  • Kaasik K, Lee CC. (2004). Reciprocal regulation of haem biosynthesis and the circadian clock in mammals. Nature. 430:467–71
  • Khapre RV, Patel SA, Kondratova AA, et al. (2014). Metabolic clock generates nutrient anticipation rhythms in mTOR signaling. Aging. 6:675–86
  • Kil IS, Lee SK, Ryu KW, et al. (2012). Feedback control of adrenal steroidogenesis via H2O2-dependent, reversible inactivation of peroxiredoxin III in mitochondria. Mol Cell. 46:584–94
  • Koike N, Yoo SH, Huang H C, et al. (2012). Transcriptional architecture and chromatin landscape of the core circadian clock in mammals. Science. 338:349–54
  • Kondratova AA, Kondratov RV. (2012). The circadian clock and pathology of the ageing brain. Nat Rev Neurosci. 13:325–35
  • Kondratov RV, Kondratova AA, Gorbacheva VY, et al. (2006). Early aging and age-related pathologies in mice deficient in BMAL1, the core component of the circadian clock. Genes Dev. 20:1868–73
  • Libert S, Guarente L. (2013). Metabolic and neuropsychiatric effects of calorie restriction and Sirtuins. Annu Rev Physiol. 75:669–84
  • Lombard DB, Alt FW, Cheng HL, et al. (2007). Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation. Mol Cell Biol. 27:8807–14
  • Miller BH, McDearmon EL, Panda S, et al. (2007). Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation. Proc Natl Acad Sci USA. 104:3342–7
  • Musiek ES, Lim MM, Yang G, et al. (2013). Circadian clock proteins regulate neuronal redox homeostasis and neurodegeneration. J Clin Invest. 123:5389–400
  • Nakamura TJ, Nakamura W, Yamazaki S, et al. (2011). Age-related decline in circadian output. J Neurosci. 31:10201–5
  • O'Neill JS, Reddy AB. (2011). Circadian clocks in human red blood cells. Nature. 469:498–503
  • Panda S, Antoch MP, Miller BH, et al. (2002). Coordinated transcription of key pathways in the mouse by the circadian clock. Cell. 109:307–20
  • Partch CL, Green CB, Takahashi JS. (2014). Molecular architecture of the mammalian circadian clock. Trends Cell Biol. 24:90–9
  • Peek CB, Affinati AH, Ramsey KM, et al. (2013). Circadian clock NAD+ cycle drives mitochondrial oxidative metabolism in mice. Science. 342:1243417
  • Portaluppi F, Smolensky MH, Touitou Y. (2010). Ethics and methods for biological rhythm research on animals and human beings. Chronobiol Int. 27:1911–29
  • Rey G, Cesbron F, Rougemont J, et al. (2011). Genome-wide and phase-specific DNA-binding rhythms of BMAL1 control circadian output functions in mouse liver. PLoS Biol. 9:e1000595
  • Scarpulla RC. (2008). Transcriptional paradigms in mammalian mitochondrial biogenesis and function. Physiol Rev. 88:611–38
  • Schmidt O, Pfanner N, Meisinger C. (2010). Mitochondrial protein import: From proteomics to functional mechanisms. Nat Rev Mol cell Biol. 11:655–67
  • Sellix MT, Evans JA, Leise TL, et al. (2012). Aging differentially affects the re-entrainment response of central and peripheral circadian oscillators. J Neurosci. 32:16193–202
  • Stanley BA, Sivakumaran V, Shi S, et al. (2011). Thioredoxin reductase-2 is essential for keeping low levels of H2O2 emission from isolated heart mitochondria. J Biol Chem. 286:33669–77
  • Turek FW, Joshu C, Kohsaka A, et al. (2005). Obesity and metabolic syndrome in circadian Clock mutant mice. Science. 308:1043–5
  • Vollmers C, Gill S, DiTacchio L, et al. (2009). Time of feeding and the intrinsic circadian clock drive rhythms in hepatic gene expression. Proc Natl Acad Sci USA. 106:21453–8
  • Wang W, Fang H, Groom L, et al. (2008). Superoxide flashes in a single mitochondria. Cell. 134:279–90
  • Wei Y, Dittenhafer-Reed KE, Denu JM. (2012). SIRT3 protein deacetylates isocitrate dehydrogenase 2 (Idh2) and regulates mitochondrial redox status. J Biol Chem. 287:14078–86
  • Wood ZA, Schroder E, Harris JR, Poole LB. (2003). Structure, mechanism and regulation of peroxiredoxins. Trends Biochem Sci. 28:32–40
  • Xu YQ, Zhang D, Jin T, et al. (2012). Diurnal variation of hepatic antioxidant gene expression in mice. PLoS One. 7:e44237
  • Yamazaki S, Straume M, Tei H, et al. (2002). Effects of aging on central and peripheral mammalian clocks. Proc Natl Acad Sci USA. 99:10801–6

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