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Review

RNA interference: a promising technique for the improvement of traditional crops

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Pages 248-259 | Published online: 06 Aug 2012

References

  • Akashi H, Miyagishi M, Taira K. 2004. RNAi expression vectors in plant cells. Methods Mol Biol. 252:533–543.
  • Amubode FO, Fetuga BL. 1983. Proximate composition and chemical assay of the methionine, lysine and tryptophan concentration of some forest tree seeds. Food Chem. 12:67–72.
  • Andersson M, Melander M, Pojmark P, Larsson H, Bülow L, Hofvander P. 2006. Targeted gene suppression by RNA interference: an efficient method for production of high-amylose potato lines. J Biotechnol. 123:137–148.
  • Bartel DP. 2004. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell. 116:281–297.
  • Bhat R, Sridhar KR, Young C-C, Arun AB, Ganesh S. 2008. Composition and functional properties of raw and electron beam-irradiated Mucuna pruriens seeds. Int J Food Sci Technol. 43:1338–1351.
  • Borsani O, Zhu J, Verslues PE, Sunkar R, Zhu JK. 2005. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis. Cell. 123:1279–1291.
  • Brodersen P, Sakvarelidze-Achard L, Bruun-Rasmussen M, Dunoyer P, Yamamoto YY, Sieburth L, Voinnet O. 2008. Widespread translational inhibition by plant miRNAs and siRNAs. Science. 320 5880: 1185–1190.
  • Byzova M, Verduyn C, De Brouwer D, De Block M. 2004. Transforming petals into sepaloid organs in Arabidopsis and oilseed rape: implementation of the hairpin RNA-mediated gene silencing technology in an organ-specific manner. Planta. 218:379–387.
  • Chai XJ, Wang PW, Guan SY, Xu YW. 2005. Reducing the maize amylopectin content through RNA interference manipulation. J Plant Physiol Mol Biol. 31:625–630 (in Chinese).
  • Chan SW, Henderson IR, Jacobsen SE. 2005. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat Rev Genet. 6:351–360.
  • Chel-Guerrero L, Perez-Flores V, Bentacur-Ancona D, Davila-Ortiz G. 2002. Functional properties of flours and protein isolates from Phaseolus lunatus and Canavalia ensiformis seeds. J Agric Food Chem. 50:584–591.
  • Chen S, Hofius D, Sonnewald U, Bornke F. 2003. Temporal and spatial control of gene silencing in transgenic plants by inducible expression of double-stranded RNA. Plant J. 36:731–740.
  • Chrisetnse AH, Sharrock RA, Quail PH. 1992. Maize polyubiqauitin genes: structure, thermal perturbation of expression and transcript splicing and promoter activity following transfer to protoplasts by extroporation. Plant Mol Biol. 18:675–681.
  • Chuang C, Meyerowitz EM. 2000. Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana. Proc Natl Acad Sci USA. 97:4985–4990.
  • Conner AJ, Glare TR, Nap JP. 2003. The release of genetically modified crops into the environment. Part II. Overview of ecological risk assessment. Plant J. 33:19–46.
  • Coulter JB, Suliman GI, Omer MI, Macfarlane SB, Moody JB, Hendrickse RG. 1988. Proteinenergy malnutrition in Northern Sudan: clinical studies. Eur J Clin Nutr. 42:787–796.
  • Dalmay T, Horsefield R, Braunstein TH, Baulcombe DC. 2001. SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. EMBO J. 20:2069–2078.
  • Davies WP. 2003. An historical perspective from the Green Revolution to the gene revolution. Nut Rev. 61:S124–S134.
  • Davuluri GR, Tuinen A, Fraser PD, Manfredonia A, Newman R, Burgess D, . 2005. Fruit-specific RNAi-mediated suppression of DET1 enhances carotenoid and flavonoid content in tomatoes. Nat Biotechnol. 23:890–895.
  • De Jong M, Wolters-Arts M, Feron R, Mariani C, Vriezen WH. 2009. The Solanum lycopersicum auxin response factor 7 (SlARF7) regulates auxin signaling during tomato fruit set and development. Plant J. 5:160–170.
  • Denli AM, Hannon GJ. 2003. RNAi: an ever-growing puzzle. Trends Biochem Sci. 28:196–201.
  • Dodo HW, Konan KN, Chen FC, Egnin M, Viquez OM. 2008. Alleviating peanut allergy using genetic engineering: the silencing of the immunodominant allergen Ara h 2 leads to its significant reduction and a decrease in peanut allergenicity. Plant Biotechnol J. 6:135–145.
  • Eady CC, Kamoi T, Kato M, Porter NG, Davis S, Shaw M, . 2008. Silencing onion lachrymatory factor synthase causes a significant change in the sulfur secondary metabolite profile. Plant Physiol. 147:2096–2106.
  • Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. 1998. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature. 91:806–811.
  • Flores T, Karpova O, Su X, Zheng P, Bilyeu K, Sleper DA, . 2008. Silencing of GmFAD3 gene by siRNA leads to low a-linolenic acids (18:3) of fad3-mutant phenotype in soybean [Glycine max (Merr.)]. Transgenic Res. 17:839–850.
  • Gasciolli V, Mallory AC, Bartel DP, Vaucheret H. 2005. Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs. Curr Biol. 15:1494–1500.
  • Guo HS, Fei JF, Xie Q, Chua NH. 2003. A chemical regulated inducible RNAi system in plants. Plant J. 34:383–392.
  • Hamilton AJ, Baulcombe DC. 1999. A species of small antisense RNA in posttranscriptional gene silencing in plants. Science. 286:950–952.
  • Heilersig HJB, Loonen A, Bergervoet M, Wolters AMA, Visser RGF. 2006. Post-transcriptional gene silencing of GBSSI in potato: effects of size and sequence of the inverted repeats. Plant Mol Biol. 60:647–662.
  • Hervé V, Vazquez F, Crété P, Bartel DP. 2004. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18:1187–1197.
  • Hirai S, Oka S, Adachi E, Kodama H. 2007. The effects of spacer sequences on silencing efficiency of plant RNAi vectors. Plant Cell Rep. 26:651–659.
  • Hoisington D, Khairallah M, Reeves T, Ribaut JM, Skovmand B, Taba S, Warburton M. 1999. Plant genetic resources: what can they contribute toward increased crop productivity?. Proc Natl Acad Sci USA. 96:5937–5943.
  • Horiguchi G. 2004. RNA silencing in plants: a shortcut to functional analysis. Differentiation. 72:65–73.
  • Houmard NM, Mainville JL, Bonin CP, Huang S, Luethy MH, Malvar TM. 2007. High-lysine corn generated by endosperm specific suppression of lysine catabolism using RNAi. Plant Biotechnol J. 5:605–614.
  • Jagtap UB, Gaurav RG, Bapat VA. 2011. Role of RNA interference in plant improvement. Naturwissenschaften. 98:473–492.
  • Jinek M, Doudna JA. 2009. A three-dimensional view of the molecular machinery of RNA interference. Nature. 457:405–412.
  • Karlowski WM, Hirsch AM. 2003. The over-expression of an alfalfa RING-H2 gene induces pleiotropic effects on plant growth and development. Plant Mol Biol. 52:121–133.
  • Khvorova A, Reynolds A, Jayasena SD. 2003. Functional siRNAs and miRNAs exhibit strand bias. Cell. 115:209–216.
  • Kusaba M, Miyahara K, Iida S, Fukuoka H, Takano T, Sassa H, . 2003. Low glutelin content1: a dominant mutation that suppresses the Glutelin multigene family via RNA silencing in rice. Plant Cell. 15:1455–1467.
  • Llave C, Kasschau KD, Rector MA, Carrington JC. 2002. Endogenous and silencing-associated small RNAs in plants. Plant Cell. 14:1605–1619.
  • Le LQ, Mahler V, Lorenz Y, Scheurer S, Biemelt S, Vieths S, Sonnewald U. 2006. Reduced allergenicity of tomato fruits harvested from Lyc e 1-silenced transgenic tomato plants. J Allergy Clin Immunol. 118:1176–1183.
  • Lewis BP, Burge CB, Bartel DP. 2005. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell. 120:15–20.
  • Liu Q, Singh SP, Green AG. 2002. High-stearic and high-oleic cottonseed oils produced by hairpin RNA-mediated post-transcriptional gene silencing. Plant Physiol. 129:1732–1743.
  • Liu C, Zhang L, Sun J, Luo Y, Wang MB, Fan YL, Wang L. 2010. A simple artificial microRNA vector based on athmiR169d precursor from Arabidopsis. Mol Biol Rep. 37:903–909.
  • Marques JT, Williams BR. 2005. Activation of the mammalian immune system by siRNAs. Nat Biotechnol. 23:1399–1405.
  • McElroy D, Zhang WG, Cao J, Wu R. 1990. Isolation of an efficient actin promoter for use in rice transformation. Plant Cell. 2:163–171.
  • Meister G, Tuschl T. 2004. Mechanism of gene silencing by double-stranded RNA. Nature. 431:343–349.
  • Miki D, Shimamoto K. 2004. Simple RNAi vectors for stable and transient suppression of gene function in rice. Plant Cell Physiol. 45:490–495.
  • Molesini B, Rotino GL, Spena A, Pandolfini T. 2009. Expression profile analysis of early fruit development in iaaM-parthenocarpic tomato plants. BMC Res Notes. 2:1–7.
  • Montgomery MK, Fire A. 1998. Double-stranded RNA as a mediator in sequence-specific genetic silencing and co-suppression. Trends Genet. 14:255–258.
  • Napoli C, Lemieux C, Jogensen R. 1990. Introduction of a chimeric chalcone synthase gene into petunia results in reversible co-suppression of homologous genes in trans. Plant Cell. 2:279–289.
  • Nishihara M, Nakatsuka T, Yamamuras S. 2005. Flavonoid components and flower color change in transgenic tobacco plants by suppression of chalcone isomerase gene. FEBS Lett. 579:6074–6078.
  • Odell JT, Nagy F, Chua NH. 1985. Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature. 313:810–812.
  • Ogita S, Uefuji H, Morimoto M, Sano H. 2004. Application of RNAi to confirm the obromine as the major intermediate for caffeine biosynthesis in coffee plants with potential for construction of decaffeinated varieties. Plant Mol Biol. 54:931–941.
  • Omidvar V, Abdullah SNA, Izadfard A, Ho CL, Mahmood M. 2010. The oil palm metallothionein promoter contains a novel AGTTAGG motif conferring its fruit-specific expression and is inducible by abiotic factors. Planta. 232:925–936.
  • Ossowski S, Schwab R, Weigel D. 2008. Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J. 53:674–690.
  • Otani M, Hamada T, Katayama K, Kitahara K, Kim SH, Takahata Y, . 2007. Inhibition of the gene expression for granule-bound starch synthase I by RNA interference in sweet potato plants. Plant Cell Rep. 26:1801–1807.
  • Panstruga R, Kim MC, Cho MJ, Schulze-Lefert P. 2003. Testing the efficiency of dsRNAi constructs in vivo: a transient expression assay based on two fluorescent proteins. Mol Biol Rep. 30:135–140.
  • Ratcliff F, Harrison BD, Baulcombe DC. 1997. A similarity between viral defense and gene silencing in plants. Science. 276:1558–1560.
  • Regina A, Bird A, Topping D, Bowden S, Freeman J, Barsby T, . 2006. High-amylose wheat generated by RNA interference improves indices of large-bowel health in rats. Proc Natl Acad Sci USA. 103:3546–3551.
  • Rhoades J, Bartel MW, Bartel B. 2006. MicroRNAs and their regulatory roles in plants. Annu Rev Plant Biol. 57:19–53.
  • Schijlen EGWM, De Vos CHR, Martens S, Jonker HH, Rosin FM, Molthoff JW, . 2007. RNA interference silencing of chalcone synthase, the first step in the flavonoid biosynthesis pathway, leads to parthenocarpic tomato fruits. Plant Physiol. 144:1520–1530.
  • Schwab R, Ossowski S, Riester M, Warthman N, Weigel D. 2006. Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell. 18:1121–1133.
  • Schwarz DS, Hutvágner G, Du T, Xu Z, Aronin N, Zamore PD. 2003. Asymmetry in the assembly of the RNAi enzyme complex. Cell. 115:199–208.
  • Segal G, Song R, Messing J. 2003. A new opaque variant of maize by a single dominant RNA-interference-inducing transgene. Genetics. 165:387–397.
  • Shangguan XX, Xu B, Yu ZX, Wang LJ, Chen XY. 2008. Promoter of a cotton fiber MYB gene functional in trichomes of Arabidopsis and glandular trichomes of tobacco. J Exp Bot. 59:3533–3542.
  • Shomura A, Izawa T, Ebana K, Ebitani T, Kanegae H. 2008. Deletion in a gene associated with grain size increased yields during rice domestication. Nat Genet. 40:1023–1028.
  • Sinha SK. 2010. RNAi induced gene silencing in plants. Physiol Mol Biol Plants. 16:321–332.
  • Sinha SK, Dubey N, Sachdev A. 2008. Gene silencing constructs for alteration of seed fatty acid composition by RNAi induced transgene silencing. New Bot. 35:23–32.
  • Smith NA, Singh SP, Wang MB, Stoutjesdijk P, Green A, Waterhouse PM. 2000. Total silencing by intron-spliced hairpin RNAs. Nature. 407:319–320.
  • Sotelo A, Contreras E, Flores S. 1995. Nutritional value and content of antinutritional compounds and toxics in ten wild legumes of Yucatan Peninsula. Plant Foods Hum Nutr. 47:115–123.
  • Sunilkumar G, Campbell LM, Puckhaber L, Stipanovic RD, Rathore KS. 2006. Engineering cottonseed for use in human nutrition by tissue-specific reduction of toxic gossypol. Proc Natl Acad Sci USA. 103:18054–18059.
  • Tabara H, Grishok A, Mello CC. 1998. RNAi in C. elegans: soaking in the genome sequence. Science. 282:430–431.
  • Tang G, Galili G, Zhuang X. 2007. RNAi and microRNA: breakthrough technologies for the improvement of plant nutritional value and metabolic engineering. Metabolomics. 3:357–369.
  • Ullu E, Tschudi C, Chakraborty T. 2004. RNA interference in protozoan parasites. Cell Microbiol. 6:509–519.
  • Voinnet O. 2009. Origin, biogenesis, and activity of plant microRNAs. Cell. 136:669–687.
  • Vaucheret H, Vazquez F, Crete P, Bartel DP. 2004. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev. 18:1187–1197.
  • Wang X, Yang Y, Yu C, Zhou J, Cheng Y, Yan C, Chen J. 2010. A highly efficient method for construction of rice artificial micro-RNA vectors. Mol Biotehnol. 46 3: 211–218.
  • Waterhouse PM, Ming-Bo W, Lough T. 2001. Gene silencing as an adaptive defense against viruses. Nature. 411:834–842.
  • Wesley SV, Helliwell CA, Smith NA, Wang MB, Rouse DT, Liu Q, . 2001. Constructs for efficient, effective and high throughput gene silencing in plants. Plant J. 27:581–590.
  • Wielopolska A, Townley H, Moore I, Waterhouse P, Helliwell C. 2005. A high-throughput inducible RNAi vector for plants. Plant Biotechnol J. 3:583–590.
  • Xie Z, Allen E, Wilken A, Carrington JC. 2005. DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. Proc Natl Acad Sci USA. 102:12984–12989.
  • Xiong AS, Yao QH, Peng RH, Li X, Han PL, Fan HQ. 2005. Different effects on ACC oxidase gene silencing triggered by RNA interference in transgenic tomato. Plant Cell Rep. 23:639–646.
  • Xu P, Zhang Y, Kang L, Roossinck MJ, Mysore KS. 2006. Computational estimation and experimental verification of off-target silencing during posttranscriptional gene silencing in plants. Plant Physiol. 142:429–440.
  • Xu L, Ye R, Zheng Y, Wang Z, Zhou P, Lin Y, Li D. 2010. Isolation of the endosperm-specific LPAAT gene promoter from coconut (Cocos nucifera L.) and its functional analysis in transgenic rice plants. Plant Cell Rep. 29:1061–1068.
  • Yue SJ, Li H, Li YW, Zhu YF, Guo JK, Liu YJ, . 2008. Generation of transgenic wheat lines with altered expression levels of 1Dx5 high-molecular weight glutenin subunit by RNA interference. J Cereal Sci. 47:153–161.
  • Zhao YY, Yang G, Wang-Pruski G, You MS. 2008. Phyllotreta striolata (Coleoptera: Chrysomelidae): arginine kinase cloning and RNAi-based pest control. Eur J Entomol. 105:815–822.
  • Zhu Y, Cai XL, Wang ZY, Hong MM. 2003. An interaction between a MYC protein and an EREBP protein is involved in transcriptional regulation of the rice Wx gene. J Biol Chem. 278:47803–47811.
  • Zilberman D, Cao X, Jacobsen SE. 2003. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science. 299:716–719.

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