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Review Article

The Eurasian genes of the 2009 pandemic influenza virus: an integrative perspective on their conveyance to and assimilation in America

Pages 222-232 | Received 05 Jan 2014, Accepted 29 Apr 2014, Published online: 24 Jul 2014

References

  • Anhlan D, Grundmann N, Makalowski W, et al. (2011). Origin of the 1918 pandemic H1N1 influenza A virus as studied by codon usage patterns and phylogenetic analysis. RNA 17:64–73
  • Babakir-Mina M, Dimonte S, Ciccozzi M, et al. (2010). The novel swine-origin H1N1 influenza A virus riddle: is it a domestic bird H1N1-derived virus? New Microbiol 33:77–81
  • Bahl J, Vijaykrishna D, Holmes EC, et al. (2009). Gene flow and competitive exclusion of avian influenza A in the natural reservoir hosts. Virology 390:289–97
  • Barman S, Krylov PS, Fabrizio TP, et al. (2012). Pathogenicity and transmissibility of North American triple reassortant swine influenza A viruses in ferrets. PLoS Pathog 8:e1002791
  • Blue-winged Teal. (2013). Wikipedia. Available at http://en.wikipedia.org/wiki/Blue-winged_Teal [last accessed 20 Jun 2014]
  • Brown IH. (2000). The epidemiology and evolution of influenza viruses in pigs. Vet Microbiol 74:29–46
  • Choi YK, Lee JH, Erickson G, et al. (2004). H3N2 influenza virus transmission from swine to Turkeys, United States. Emerg Infect Dis 10:2156–60
  • Davidson WR, Yoder HW, Brugh M, Nettles VF. (1988). Serological monitoring of eastern wild turkeys for antibodies to Mycoplasma spp. and avian influenza viruses. J Wildl Dis 24:348–55
  • Dimock WW. (1919). Differential diagnoses of diseases of swine. J Am Vet Med Assoc 54:321–37
  • Dong G, Luo J, Zhang H, et al. (2011). Phylogenetic diversity and genotypical complexity of H9N2 influenza A viruses revealed by genomic sequence analysis. PLoS One 6:e17212
  • Dugan VG, Chen R, Spiro DJ, et al. (2008). The evolutionary genetics and emergence of avian influenza viruses in wild birds. PLoS Pathog 4:e1000076
  • Escalera-Zamudio M, Cobián-Güemes G, de los Dolores Soto-del Río M, et al. (2012). Characterization of an influenza A virus in Mexican swine that is related to the A/H1N1/2009 pandemic clade. Virology 433:176–82
  • FAO. (2005). H5N1 outbreaks in 2005 and major flyways of migratory birds. UN: FAO
  • Gibbs AJ, Armstrong JS, Downie JC. (2009). From where did the 2009 ‘swine-origin' influenza A virus (H1N1) emerge? Virol J. 6:207
  • Goldstein T, Mena I, Anthony SJ, et al. (2013). Pandemic H1N1 influenza isolated from free-ranging Northern Elephant Seals in 2010 off the central California coast. PLoS One 8:e62259
  • Gray GC, Bender JB, Bridges CB, et al. (2012). Influenza A(H1N1)pdm09 virus among healthy show pigs, United States. Emerg Infect Dis 18:1519–21
  • Guerra F. (1988). The earliest American epidemic: the influenza of 1493. Soc Sci History 12:305–25
  • Hannoun C. (1993). “La Grippe,” Ed Techniques EMC (Encyclop die M dico-Chirurgicale), Maladies Infectieuses, 8-069-A-10. [Documents de la Conf rence de l’Institut Pasteur: La Grippe Espagnole de 1918]
  • Hatchette TF, Walker D, Johnson C, et al. (2004). Influenza A viruses in feral Canadian ducks: extensive reassortment in nature. J Gen Virol 85:2327–37
  • Hinshaw VS, Webster RG, Bean WJ, et al. (1983). Swine influenza-like viruses in turkeys: potential source of virus for humans? Science 220:206–8
  • Jahangir A, Ruenphet S, Sultana N, et al. (2012). Genetic analysis of avian influenza viruses: cocirculation of avian influenza viruses with allele A and B nonstructural gene in Northern Pintail (Anas acuta) ducks wintering in Japan. Influenza Res Treat 2012:1–10
  • Karasin AI, Brown IH, Carman S, Olsen CW. (2000). Isolation and characterization of H4N6 avian influenza viruses from pigs with pneumonia in Canada. J Virol 74:9322–7
  • Karasin AI, West K, Carman S, Olsen CW. (2004). Characterization of avian H3N3 and H1N1 influenza A viruses isolated from pigs in Canada. J Clin Microbiol 42:4349–54
  • Kim SH, Moon OK, Lee KK, et al. (2011). Outbreak of pandemic influenza (H1N1) 2009 in pigs in Korea. Vet Rec 169:155
  • Koehler AV, Pearce JM, Ip HS, et al. (2008). Genetic evidence of intercontinental movement of avian influenza by a migratory bird: the Northern Pintail (Anas acuta). Mol Ecol 17:4754–62
  • Krauss S, Obert CA, Franks J, et al. (2007). Influenza in migratory birds and evidence of limited intercontinental virus exchange. PLoS Pathog 3:e167
  • Lam TTY, et al. (2012). Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among NoA birds. Ecol Lett 15:24–33
  • Lekcharoensuk P, Lager KM, Vemulapalli R, et al. (2006). Novel swine influenza virus subtype H3N1, United States. Emerg Infect Dis 12:787–94
  • Lessler J, Cummings DA, Fishman S, et al. (2007). Transmissibility of swine flu at Fort Dix, 1976. J R Soc Interface 4:755–62
  • Li C, Yu K, Tian G, et al. (2005). Evolution of H9N2 influenza viruses from domestic poultry in Mainland China. Virology 340:70–83
  • Liu JH, Okazaki K, Bai GR, et al. (2004). Interregional transmission of the internal protein genes of H2 influenza virus in migratory ducks from NoA to Eurasia. Virus Genes 29:81–6
  • López-Cervantes MI, Venado A, Moreno A, et al. (2009). On the spread of the novel influenza A (H1N1) virus in Mexico. J Infect Dev Ctries 3:327–30
  • Lowery GH Jr. (1974). The Mammals of Louisiana and its Adjacent Waters. Louisiana: Louisiana State University Press
  • Ma W, Liu Q, Qiao C, et al. (2014). North American triple reassortant and Eurasian H1N1 swine influenza viruses do not readily reassort to generate a 2009 pandemic H1N1-like virus. MBio 5:e00919–13
  • Madge S, Burn H. (1988). Wildfowl: an identification guide to the ducks, geese and swans of the world (Helm Identification Guides). Bromley, Kent: ChristopherHelm. 222–4
  • Morens DM, Taubenberger JK. (2010). Historical thoughts on influenza viral ecosystems, or behold a pale horse, dead dogs, failing fowl, and sick swine. Influenza Other Respir Viruses 6:327–37
  • Obenauar JC, Denson J, Mehta PK, et al. (2006). Large-scale sequence analysis of avian influenza isolates. Science 311:1576–80
  • Olsen CW, Karasin A, Erickson G. (2003). Characterization of a swine-like reassortant H1N2 influenza virus isolated from a wild duck in the United States. Virus Res 93:115–21
  • Pantin-Jackwood M, Wasilenko JL, Spackman E, et al. (2010). Susceptibility of turkeys to pandemic-H1N1 virus by reproductive tract insemination. Virol J 7:27–33
  • Pappaioanou M. (2007). Infectious disease advances: influenza, avian influenza. Available at: http://www.sph.umn.edu/img/assets/25422/M_Pappaioanou.pdf
  • Pasma TJ. (2011). Assessing the feasibility of swine influenza surveillance in Manitoba. MSc Thesis, University of Manitoba, Manitoba
  • Pearce JM, Ramey A, Flint PL, et al. (2009). Avian influenza at both ends of a migratory flyway: characterizing viral genomic diversity to optimize surveillance plans for NoA. Evol Appl 2:457–68
  • Pearce JM, Reeves AB, Ramey AM, et al. (2011). Interspecific exchange of avian influenza virus genes in Alaska: the influence of interhemispheric migratory tendency and breeding ground sympatry. Mol Ecol 20:1015–25
  • Ramakrishnan MA, Wang P, Abin M, et al. (2010). Triple reassortant swine influenza A (H3N2) virus in waterfowl. Emerg Infect Dis 16:728–30
  • Reis M, Hay AJ, Goldstein RA. (2009). Using non-homogeneous models of nucleotide substitution to identify host shift events: application to the origin of the 1918 ‘Spanish' influenza pandemic virus. J Mol Evol 69:333–45
  • Shoham D. (2011). The modes of evolutionary emergence of primal and late pandemic influenza virus strains from viral reservoir in animals: an interdisciplinary analysis. Influenza Res Treat 2011:1–27
  • Smith GJ, Bahl J, Vijaykrishna D, et al. (2009a). Dating the emergence of pandemic influenza viruses. Proc Natl Acad Sci USA 106:11709–12
  • Smith GJ, Vijaykrishna D, Bahl J, et al. (2009b). Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 459:1122–5
  • Spackman E, Stallknecht DE, Slemons RD, et al. (2005). Phylogenetic analyses of type A influenza genes in natural reservoir species in NoA reveals genetic variation. Virus Res 114:89–100
  • Storey AA, Ramírez JM, Quiroz D, et al. (2007). Radiocarbon and DNA evidence for a pre-Columbian introduction of Polynesian chickens to Chile. Proc Natl Acad Sci USA 104:10335–9
  • Suarez DL, Woolcock PR, Bermudez AJ, Senne DA. (2002). Isolation from turkey breeder hens of a reassortant H1N2 influenza virus with swine, human, and avian lineage genes. Avian Dis 46:111–21
  • Swayne DE, Pantin-Jackwood M, Kapczynski D, et al. (2009). Susceptibility of poultry to pandemic (H1N1) 2009 virus. Emerg Infect Dis 15:2061–3
  • Thornton EK, Emery KF, Steadman DW, et al. (2012). Earliest Mexican Turkeys (Meleagris gallopavo) in the Maya Region: implications for pre-hispanic animal trade and the timing of Turkey domestication. PLoS One 7:e42630
  • Trifonov V, Khiabanian H, Rabadan R. (2009). Geographic dependence, surveillance, and origins of the 2009 influenza A (H1N1) virus. N Engl J Med 361:115–9
  • Tu J, Zhou H, Jiang T, et al. (2009). Isolation and molecular characterization of equine H3N8 influenza viruses from pigs in China. Arch Virol 154:887–90
  • Wang N, Zou W, Yang Y, et al. (2012). Complete genome sequence of an H10N5 avian influenza virus isolated from pigs in central China. J Virol 86:13865–6
  • Webster RG, Krauss S, Hulse-Post D, Sturm-Ramirez K. (2007). Evolution of influenza A viruses in wild birds. J Wildlife Dis Suppl 43:S1–6
  • Weingartl HM, Berhane Y, Hisanaga T, et al. (2009). Genetic and pathobiologic characterization of pandemic H1N1 2009 influenza viruses from a naturally infected swine herd. J Virol 84:2245–56
  • Widjaja L, Krauss SL, Webby RJ, et al. (2004). Matrix gene of influenza a viruses isolated from wild aquatic birds: ecology and emergence of influenza a viruses. J Virol 78:8771–9
  • Winker K, Gibson DD. (2010). The Asia-to-America influx of avian influenza wild bird hosts is large. Avian Dis 54:477–82
  • Zhou H, Zhang A, Chen H, Jin M. (2011). Emergence of novel reassortant H3N2 influenza viruses among ducks in China. Arch Virol 156:1045–8
  • Zhu H, Webby R, Lam TTY, et al. (2011). History of swine influenza viruses in Asia. Curr Top Microbiol Immunol 370:57–68

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