xln23 from Streptomyces chattanoogensis UAH23 Encodes a Putative Enzyme with Separate Xylanase and Arabinofuranosidase Catalytic Domains

References

• Arhin F. F., Shareck F., Kluepfel D., Morosoli R. Effects of disruption of xylanase-encoding genes on the xylanolytic system of Streptotnyces lividans. Journal of Bacteriology 1994; 176: 4924–4930
   PubMed Web of Science ®Google Scholar
• Bibb M. J., Findlay P. R., Johnson M. W. The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-codon sequences. Gene 1984; 30: 157–166
   PubMed Web of Science ®Google Scholar
• Biely P., Vršanská M., Kučar Š. Identification and mode of action of endo-(l-4)-β-xylanases. Xylans and Xylanases, J. Visser, G. Beldman, M. A. Kuster-van Someren, A. G.J Voragen. Elsevier. 1992; 81–97
   Google Scholar
• Biely P. Biochemical aspects of the production of microbial hemicellulases. Hemicellulose and Hemicellulases, M. P. Coughlan, G. P. Hazle-Wood. Portland Press. 1993; 29–32
   Google Scholar
• Chater K. F., Losick R. Mycelial life style of Strepto-myces coelicolor A3(2) and its relatives. Bacteria as multicellular organisms, J. A Shapiro, M. Dworkin. Oxford University Press. 1997; 149–183
   Google Scholar
• Coughlan M. P. Towards an understanding of the mechanism of action of main chain-hydrolysing xylanases. Xylans and Xylanases, J. Visser, G. Beldman, M. A. Kuster-van Someren, A. G.J Voragen. Elsevier. 1992; 111–139
   Google Scholar
• Coughlan M. P., Hazlewood G. P. (3–1′1-D xylan degrading enzyme system. Biotechnology and Applied Biochemistry 1993; 17: 259–289
   PubMed Web of Science ®Google Scholar
• Coutinho P. M., Henrissat B. 1999, Carbohydrate-Active Enzymes server at URL: http://afmb.cnrs-mrs.fr/∼pedro/CAZY/db.html
   Google Scholar
• Crawford D. L. Lignocellulose decomposition by selected Streptomyces strains. Applied and Environmental Microbiology 1978; 35: 1041–1045
   PubMed Web of Science ®Google Scholar
• Flint H. J., Martin J., McPerson C. A., Daniel A. S., Zhang J. X. A bifunctional enzyme, with separate xyla-nase and beta (1, 3–1, 4) glucanase domains, encoded by the xynD gene of Ruminococcus flavefaciens. Journal of Bacteriology 1993; 175: 2943–2951
   PubMed Web of Science ®Google Scholar
• Gianotta F., Georis J., Moreau A., Mazy-Sevais C, Joris B., Dusart J. A sequence-specific DNA-binding protein interacts with the xlnC upstream region of Streptomyces sp. Strain EC3. FEMS Microbiology Letters 1996; 142: 91–97
   PubMed Web of Science ®Google Scholar
• Gielkens M. M., Visser J., de Graaff L. H. Arab-inoxylan degradation by fungi: characterization of the arabinoxylan-arabinofuranohydrolase encoding genes from Aspergillus niger and Aspergillus tubingensis. Current Genetics 1997; 31: 22–29
   PubMed Web of Science ®Google Scholar
• Gielkens M., Gonzalez-Candelas L., Sanchez-Torres P., van de Vondervoort P., de Graaff L., Visser J., Ramon D. The abfB gene encoding the major a-L-arabino-furanosidase of Aspergillus nidulans: nucleotide sequence, regulation and construction of a disrupted strain. Microbiology 1999; 145: 735–41
   PubMed Web of Science ®Google Scholar
• Gosalbes M. J., Pérez-González J. A., González R., Navarro A. Two β-glycanase genes are clustered in Bacillus polimixa: Molecular Cloning, Expression and Sequence Analysis of Genes Encoding a Xylanase and Endo-β-Glucanase. Jounal of Bacteriology 1991; 173: 7705–7710
   PubMed Web of Science ®Google Scholar
• Haltrich D., Preiss M., Steiner W. Optimization of a culture medium for increased xylanase production by a wild strain of Schizophyllum commune. Enzyme and Microbial Technology 1993; 15: 854–860
   Web of Science ®Google Scholar
• Hanahan D. Studies on transformation of Escherichia coli with plasmids. Journal of Molecular Biology 1983; 166: 557–580
   PubMed Web of Science ®Google Scholar
• Henrissat B. A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochemical Journal 1991; 280: 309–316
   PubMed Web of Science ®Google Scholar
• Hessing J. G., van Rotterdam C, Verbakel J. M., Roza M., Maat J., van Gorcom R. F., van den Hondel C. A. Isolation and characterization of a 1, 4-p-endoxy-lanase gene of Aspergillus awamori. Current Genetics 1994; 26: 228–32
   PubMed Web of Science ®Google Scholar
• Hopwood D. A., Bibb M. J., Chater K. F., Kieser T., Bruton C. J., Kieser H. M., Lydiate D. J., Smith C. P., Ward J. M., Schrempf H. Genetic Manipulation of Streptomyces, a laboratory manual. The John Innes Foundation. 1985, (ed)
   Google Scholar
• Ishikawa J., Hotta K. FramePlot: a new implementation of the frame analysis for predicting protein-coding regions in bacterial DNA with a high G+C content. FEMS Microbiology Letters 1999; 174: 251–253
   PubMed Web of Science ®Google Scholar
• Janssen G. R., Bibb M. J. Derivatives of pUC18 that have Bg/II sites flanking a modified multiple cloning site and that retain the ability to identify recombinant clones by visual screening of Escherichia coli colonies. Gene 1993; 124: 133–134
   PubMed Web of Science ®Google Scholar
• Kellet L. E., Poole D. M., Ferreira L. M.A., Durrant A. J., Hazlewood G. P., Gilbert H. J. Xylanase B and arab-inofuranosidase from Pseudomonas fluorescens subsp. cellulosa contain identical cellulase-binding domains and are encoded by adjacent genes. Biochemical Journal 1990; 272: 369–376
   PubMed Web of Science ®Google Scholar
• Korn-Wendisch F., Kutzner H. J. The family Strep-tomycetaceae. The Prokaryotes, A. Balows, H. G. Trüper, M Dworkin, W. Harder, K. H. Schleifer. Springer-Verlag. 1992; 921–995
   Google Scholar
• Lopez-Fernandez C. L., Rodriguez J., Soliveri J., Copa-Patino J. L., Perez-Leblic M. I., Arias M. E. The effects of culture media on the production of xylan-degrading enzymes by Streptomyces chattanoogensis UAH 23. Journal Basic Microbiology 1995; 35: 405–412
   Web of Science ®Google Scholar
• Morosoli R., Shareck F., Kluepfel D. Protein secretion in streptomycetes. FEMS Microbiology Letters 1997; 146: 167–174
   PubMed Web of Science ®Google Scholar
• Moreau A., Shareck F., Kluepfel D., Morosoli R. Alteration of the cleavage mode and of the transglyco-sylation reactions of the xylanase A of Streptomyces lividans 1326 by site-directed mutagenesis of the Asnl73 residue. European Journal of Biochemistry 1994; 219: 261–266
   PubMedGoogle Scholar
• Nakamura Y., Wada K., Wada Y., Doi H., Kanaya S., Gojo-Bori T., Ikemura T. Codon usage tabulated from the international DNA sequence databases. Nucleic Acids Research 1996; 24: 214–215
   PubMed Web of Science ®Google Scholar
• Nielsen H., Engelbrecht J., Brunak S., von Heijne G. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Engineering 1997; 10: 1–6
   PubMedGoogle Scholar
• O'Neill G. P., Goh S. H., Warren R. A.J., Kilbum D. G., Miller R. C. Structure of the gene encoding the exoglucanase of Cellulomonasfimi. Gene 1986; 44: 325–330
   PubMed Web of Science ®Google Scholar
• Roberge M., Dupont C., Morosoli R., Shareck F., Kluepfel D. Asparagine 127 of xylanase A from Streptomyces lividans, a key residue in glycosyl hydrolases of superfamily 4/7: kinetic evidence for its involvement in stabilization of the catalytic intermediate. Protein Engineering 1997; 10: 399–403
   PubMedGoogle Scholar
• Roberge M., Shareck F., Morosoli R., Kluepfel D., Dupont C. Characterization of two important histidine residues in the active site of xylanase A from Streptomyces lividans, a family 10 glycanase. Biochemistry 1997; 36: 7769–7775
   PubMed Web of Science ®Google Scholar
• Ruiz-Arribas A., Fernández-Abalos J. M., Garda Sanchez A. L.P., Santamaria R. I. Overproduction, purification and biochemical characterization of a xylanase (Xysl) from Streptomyces halstedii JM8. Applied and Environmental Microbiology 1995; 61: 2414–2419
   PubMed Web of Science ®Google Scholar
• Sambrook J, Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press. 1989, (ed)
   Google Scholar
• Shareck F., Roy C, Yaguchi M., Morosoli R., Kluepfel D. Sequences of three genes specifying xylanases in Streptomyces lividans. Gene 1991; 107: 75–82
   PubMed Web of Science ®Google Scholar
• Shareck F., Biely P., Morosoli R., Kluepfel D. Analysis of DNA flanking the xlnB of Streptomyces lividans reveals genes encoding acetyl xylan esterase and the RNA component of ribonuclease P. Gene 1995; 153: 105–109
   PubMed Web of Science ®Google Scholar
• Sheppard P. O., Grant F. J., Oort P. J., Sprecher C. A., Foster D. C., Hagen F. S., Upshall A., McKnight G. L., O'Hara P. J. The use of conserved cellulase family-specific sequences to clone cellulase homologue cDNAs from Fusarium oxysporum. Gene 1994; 150: 163–167
   PubMed Web of Science ®Google Scholar
• Shine J., Dalgarno L. The 3′ terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to non-sense triplets and ribosome binding sites. Proceedings of the National Academy of Sciences USA 1994; 71: 1342–1346
   Google Scholar
• Surma A., Antranikian G. Xylanolytic enzymes from fungi and bacteria. Critical Reviews in Biotechnology 1997; 17: 39–67
   PubMed Web of Science ®Google Scholar
• Utt E. A., Eddy C. K., Keshav K. F., Ingram L. O. Sequencing and expression of the Butyrivibrio fibrisolvens xylB gene encoding a novel bifunctional protein with P-D-xylosidase and a-L-arabinofuranosidase activities. Applied and Environmental Microbiology 1991; 57: 1227–1234
   PubMed Web of Science ®Google Scholar
• Vincent P., Shareck F., Dupont C, Morosoli R., Kluepfel D. New alfa-L-arabinofuranosidase produced by Streptomyces lividans: cloning and DNA sequence of the abfB gene and characterization of the enzyme. Biochemical Journal 1997; 322: 845–852
   PubMed Web of Science ®Google Scholar