Genotyping of Pneumocystis jirovecii isolates from Chinese HIV-infected patients based on nucleotide sequence variations in the internal transcribed spacer regions of rRNA genes

References

• Furrer H, Egger M, Opravil M, . Discontinuation of primary prophylaxis against Pneumocystis carinii pneumonia in HIV-1-infected adults treated with combination antiretroviral therapy. Swiss HIV Cohort Study. N Engl J Med 1999; 340: 1301–1306.
   PubMed Web of Science ®Google Scholar
• Kaplan JE, Hanson D, Dworkin MS, . Epidemiology of human immunodeficiency virus-associated opportunistic infections in the United States in the era of highly active antiretroviral therapy. Clin Infect Dis 2000; 30(Suppl. 1): S5–14.
   Google Scholar
• Weverling GJ, Mocroft A, Ledergerber B, . Discontinuation of Pneumocystis carinii pneumonia prophylaxis after start of highly active antiretroviral therapy in HIV-1 infection. EuroSIDA Study Group. Lancet 1999; 353: 1293–1298.
   PubMed Web of Science ®Google Scholar
• Beck JM, Cushion MT. Pneumocystis workshop: 10th anniversary summary. Eukaryot Cell 2009; 8: 446–460.
   PubMed Web of Science ®Google Scholar
• Ruxrungtham K, Brown T, Phanuphak P. HIV/AIDS in Asia. Lancet 2004; 364: 69–82.
   PubMed Web of Science ®Google Scholar
• Worodria W, Okot-Nwang M, Yoo SD, Aisu T. Causes of lower respiratory infection in HIV-infected Ugandan adults who are sputum AFB smear-negative. Int J Tuberc Lung Dis 2003; 7: 117–123.
   PubMed Web of Science ®Google Scholar
• Huang L, Cattamanchi A, Davis JL, . HIV-associated Pneumocystis pneumonia. Proc Am Thorac Soc 2011; 8: 294–300.
   PubMedGoogle Scholar
• Latouche S, Ortona E, Mazars E, . Biodiversity of Pneumocystis carinii hominis: typing with different DNA regions. J Clin Microbiol 1997; 35: 383–387.
   PubMed Web of Science ®Google Scholar
• Banerji S, Lugli EB, Miller RF, Wakefield AE. Analysis of genetic diversity at the arom locus in isolates of Pneumocystis carinii. J Eukaryot Microbiol 1995; 42: 675–679.
   PubMed Web of Science ®Google Scholar
• Lu JJ, Bartlett MS, Shaw MM, . Typing of Pneumocystis carinii strains that infect humans based on nucleotide sequence variations of internal transcribed spacers of rRNA genes. J Clin Microbiol 1994; 32: 2904–2912.
   PubMed Web of Science ®Google Scholar
• Atzori C, Valerio A, Fantoni G, . Pneumocystis carinii ITS typing: doubtful evidence of genotype-related virulence. J Eukaryot Microbiol 2001; 48(Suppl. 1): 147S.
   PubMed Web of Science ®Google Scholar
• Matos O, Lee CH, Jin S, . Pneumocystis jiroveci in Portuguese immunocompromised patients: association of specific ITS genotypes with treatment failure, bad clinical outcome and childhood. Infect Genet Evol 2003; 3: 281–285.
   PubMed Web of Science ®Google Scholar
• Valerio A, Tronconi E, Mazza F, . DHPS-mutated isolates of Pneumocystis jirovecii from HIV-infected individuals: analysis of related ITS genotypes. J Eukaryot Microbiol 2006; 53(Suppl. 1): S108–109.
   Google Scholar
• Esteves F, Montes-Cano MA, de la Horra C, . Pneumocystis jirovecii multilocus genotyping profiles in patients from Portugal and Spain. Clin Microbiol Infect 2008; 14: 356–362.
   PubMed Web of Science ®Google Scholar
• Siripattanapipong S, Worapong J, Mungthin M, Leelayoova S, Tan-ariya P. Genotypic study of Pneumocystis jirovecii in human immunodeficiency virus-positive patients in Thailand. J Clin Microbiol 2005; 43: 2104–2110.
   PubMed Web of Science ®Google Scholar
• Robberts FJ, Liebowitz LD, Chalkley LJ. Genotyping and coalescent phylogenetic analysis of Pneumocystis jiroveci from South Africa. J Clin Microbiol 2004; 42: 1505–1510.
   PubMed Web of Science ®Google Scholar
• Nimri LF, Moura IN, Huang L, . Genetic diversity of Pneumocystis carinii f. sp. hominis based on variations in nucleotide sequences of internal transcribed spacers of rRNA genes. J Clin Microbiol 2002; 40: 1146–1151.
   PubMed Web of Science ®Google Scholar
• Hosoya N, Takahashi T, Wada M, . Genotyping of Pneumocystis carinii f. sp. hominis isolates in Japan based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes. Microbiol Immunol 2000; 44: 591–596.
   PubMed Web of Science ®Google Scholar
• Lee CH, Helweg-Larsen J, Tang X, . Update on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes. J Clin Microbiol 1998; 36: 734–741.
   PubMed Web of Science ®Google Scholar
• Tsolaki AG, Miller RF, Underwood AP, Banerji S, Wakefield AE. Genetic diversity at the internal transcribed spacer regions of the rRNA operon among isolates of Pneumocystis carinii from AIDS patients with recurrent pneumonia. J Infect Dis 1996; 174: 141–156.
   PubMed Web of Science ®Google Scholar
• Keely SP, Stringer JR. Sequences of Pneumocystis carinii f. sp. hominis strains associated with recurrent pneumonia vary at multiple loci. J Clin Microbiol 1997; 35: 2745–2747.
   PubMed Web of Science ®Google Scholar
• Latouche S, Poirot JL, Bernard C, Roux P. Study of internal transcribed spacer and mitochondrial large-subunit genes of Pneumocystis carinii hominis isolated by repeated bronchoalveolar lavage from human immunodeficiency virus-infected patients during one or several episodes of pneumonia. J Clin Microbiol 1997; 35: 1687–1690.
   PubMed Web of Science ®Google Scholar
• Kazanjian PH, Fisk D, Armstrong W, . Increase in prevalence of Pneumocystis carinii mutations in patients with AIDS and P. carinii pneumonia, in the United States and China. J Infect Dis 2004; 189: 1684–1687.
   PubMed Web of Science ®Google Scholar
• Li K, He A, Cai WP, . Absence of Pneumocystis jirovecii dihydropteroate synthase gene mutations among samples from a group of AIDS patients in China. Scand J Infect Dis 2009; 41: 152–154.
   PubMed Web of Science ®Google Scholar
• Totet A, Pautard JC, Raccurt C, Roux P, Nevez G. Genotypes at the internal transcribed spacers of the nuclear rRNA operon of Pneumocystis jiroveci in nonimmunosuppressed infants without severe pneumonia. J Clin Microbiol 2003; 41: 1173–1180.
   PubMed Web of Science ®Google Scholar
• Nevez G, Totet A, Jounieaux V, . Pneumocystis jiroveci internal transcribed spacer types in patients colonized by the fungus and in patients with pneumocystosis from the same French geographic region. J Clin Microbiol 2003; 41: 181–186.
   PubMed Web of Science ®Google Scholar
• van Hal SJ, Gilgado F, Doyle T, . Clinical significance and phylogenetic relationship of novel Australian Pneumocystis jirovecii genotypes. J Clin Microbiol 2009; 47: 1818–1823.
   PubMed Web of Science ®Google Scholar
• Beser J, Botero-Kleiven S, Lebbad M, Hagblom P, Fernandez V. A limited number of ITS haplotypes defines the diversity of Pneumocystis jirovecii strains in Sweden. Infect Genet Evol 2011; 11: 948–954.
   PubMed Web of Science ®Google Scholar
• Matsumura Y, Shindo Y, Iinuma Y, . Clinical characteristics of Pneumocystis pneumonia in non-HIV patients and prognostic factors including microbiological genotypes. BMC Infect Dis 2011; 11: 76.
   PubMed Web of Science ®Google Scholar
• Tang X, Bartlett MS, Smith JW, Lu JJ, Lee CH. Determination of copy number of rRNA genes in Pneumocystis carinii f. sp. hominis. J Clin Microbiol 1998; 36: 2491–2494.
   PubMed Web of Science ®Google Scholar
• Beser J, Hagblom P, Fernandez V. Frequent in vitro recombination in internal transcribed spacers 1 and 2 during genotyping of Pneumocystis jirovecii. J Clin Microbiol 2007; 45: 881–886.
   PubMed Web of Science ®Google Scholar
• Helweg-Larsen J, Tsolaki AG, Miller RF, Lundgren B, Wakefield AE. Clusters of Pneumocystis carinii pneumonia: analysis of person-to-person transmission by genotyping. Qjm 1998; 91: 813–820.
   PubMed Web of Science ®Google Scholar
• Tsolaki AG, Beckers P, Wakefield AE. Pre-AIDS era isolates of Pneumocystis carinii f. sp. hominis: high genotype similarity with contemporary isolates. J Clin Microbiol 1998; 36: 90–93.
   PubMed Web of Science ®Google Scholar
• Zhu TF, Wang CH, Lin P, He N. High risk populations and HIV-1 infection in China. Cell Res 2005; 15: 852–857.
   PubMed Web of Science ®Google Scholar