Genetic diversity of Pneumocystis jirovecii strains based on sequence variation of different DNA region

References

• Walzer PD, Evans HE, Copas AJ, et al. Early predictors of mortality from Pneumocystis jirovecii pneumonia in HIV-infected patients: 1985–2006. Clin Infect Dis 2008; 46: 625–633.
   PubMed Web of Science ®Google Scholar
• Van Hal SJ, Gilgado F, Doyle T, et al. Clinical significance and phylogenetic relationship of novel Australian Pneumocystis jirovecii genotypes. J Clin Microbiol 2009; 47: 1818–1823.
   PubMed Web of Science ®Google Scholar
• Esteves F, Tavares A, Costa MC, et al. Genetic characterization of the UCS and Kex1 loci of Pneumocystis jirovecii. Eur J Clin Microbiol Infect Dis 2009; 28: 175–178.
   PubMedGoogle Scholar
• Costa MC, Esteves F, Antunes F, Matos O. Genetic characterization of the dihydrofolate reductase gene of Pneumocystis jirovecii isolates from Portugal. J Antimicrob Chemother 2006; 58: 1246–1249.
   PubMedGoogle Scholar
• Latouche S, Ortona E, Mazars E, et al. Biodiversity of Pneumocystis carinii hominis: typing with different DNA regions. J Clin Microbiol 1997; 35: 383–387.
   PubMed Web of Science ®Google Scholar
• Denis CM, Mazars E, Guyot K, et al. Genetic divergence at the SODA locus of six different formae speciales of Pneumocystis carinii. Med Mycol 2000; 38: 289–300.
   PubMedGoogle Scholar
• Hugot JP, Demanche C, Barriel V, Dei-Cas E, Guillot J. Phylogenetic systematics and evolution of primate-derived Pneumocystis based on mitochondrial or nuclear DNA sequence comparison. Syst Biol 2003; 52: 735–744.
   PubMedGoogle Scholar
• Helweg-Larsen J, Tsolaki AG, Miller RF, Lundgren B, Wakefield AE. Clusters of Pneumocystis carinii pneumonia: analysis of person-to person transmission by genotyping. QJM 1998; 91: 813–820.
   PubMed Web of Science ®Google Scholar
• Miller RF, Ambrose HE, Novelli V, Wakefield AE. Probable mother-to-infant transmission of Pneumocystis carinii f. sp. hominis infection. J Clin Microbiol 2002; 40: 1555–1557.
   Google Scholar
• Demanche C, Berthelemy M, Petit T, et al. Phylogeny of Pneumocystis carinii from 18 primate species confirms host specificity and suggests coevolution. J Clin Microbiol 2001; 39: 2126–2133.
   PubMed Web of Science ®Google Scholar
• Totet A, Pautard JC, Raccurt C, Roux P, Nevez G. Genotypes at the internal transcribed spacers of the nuclear rRNA operon of Pneumocystis jiroveci in non-immunosuppressed infants without severe pneumonia. J Clin Microbiol 2003; 41: 1173–1180.
   PubMed Web of Science ®Google Scholar
• Jarboui MA, Sellami A, Sellami H, et al. Dihydropteroate synthase gene mutations in Pneumocystis jiroveci strains isolated from immunocompromised patients. Pathol Biol 2011; 59: 222–225.
   PubMedGoogle Scholar
• Ma L, Kutty G, Jia Q, et al. Analysis of variation in tandem repeats in the intron of the major surface glycoprotein expression site of the human form of Pneumocystis carinii. J Infect Dis 2002; 186: 1647–1654.
   PubMedGoogle Scholar
• Kutty G, Ma L, Kovacs JA. Characterization of the expression site of the major surface glycoprotein of human-derived Pneumocystis carinii. Mol Microbiol 2001; 42: 183–193.
   PubMedGoogle Scholar
• Sunkin SM, Stringer JR. Residence at the expression site is necessary and sufficient for the transcription of surface antigen genes of Pneumocystis carinii. Mol Microbiol 1997; 25: 147–160.
   PubMedGoogle Scholar
• Keely SP, Cushion MT, Stringer JR. Diversity at the locus associated with transcription of a variable surface antigen of Pneumocystis carinii as an index of population structure and dynamics in infected rats. Infect Immun 2003; 71: 47–60.
   PubMedGoogle Scholar
• Keely SP, Renauld H, Wakefield AE, et al. Gene arrays at Pneumocystis carinii telomeres. Genetics 2005; 170: 1589–1600.
   PubMedGoogle Scholar
• Kutty G, Maldarelli F, Achaz G, Kovacs JA. Variation in the major surface glycoprotein genes in Pneumocystis jirovecii. J Infect Dis 2008; 198: 741–749.
   PubMedGoogle Scholar
• Sunkin SM, Linke MJ, McCormack FX, Walzer PD, Stringer JR. Identification of a putative precursor to the major surface glycoprotein of Pneumocystis carinii. Infect Immun 1998; 66: 741–746.
   PubMedGoogle Scholar
• Schaffzin JK, Stringer JR. Expression of the Pneumocystis carinii major surface glycoprotein epitope is correlated with linkage of the cognate gene to the upstream conserved sequence locus. Microbiology 2004; 150: 677–686.
   PubMedGoogle Scholar
• Jarboui MA, Sellami A, Sellami H, et al. Molecular diagnosis of Pneumocystis jiroveci pneumonia in immunocompromised patients. Mycoses 2010; 53: 329–333.
   PubMedGoogle Scholar
• Wakefield AE, Pixley FJ, Banerji S, et al. Amplification of mitochondrial ribosomal RNA sequences from Pneumocystis carinii DNA of rat and human origin. Mol Biochem Parasitol 1990; 43: 69–76.
   PubMed Web of Science ®Google Scholar
• Ma L, Borio L, Masur H, Kovacs JA. Pneumocystis carinii dihydropteroate synthase but not dihydrofolate reductase gene mutations correlate with prior trimethoprim sulfamethoxazole or dapsone use. J Infect Dis 1999; 180: 1969–1978.
   PubMed Web of Science ®Google Scholar
• Takahashi T, Endo T, Nakamura T, et al. Dihydrofolate reductase gene polymorphisms in Pneumocystis carinii f. sp. hominis in Japan. J Med Microbiol 2002; 51: 510–515.
   PubMedGoogle Scholar
• Daly K, Koch J, Respaldiza N, et al. Geographical variation in serological responses to recombinant Pneumocystis jirovecii major surface glycoprotein antigens. Clin Microbiol Infect 2009; 15: 937–942.
   PubMedGoogle Scholar
• Simon C, Frati F, Beckenbach A, et al. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann Entomol Soc Am 1994; 87: 651–701.
   Web of Science ®Google Scholar
• Latouche S, Roux P, Poirot JL, et al. Preliminary results of Pneumocystis carinii strain differentiation by using molecular biology. J Clin Microbiol 1994; 32: 3052–3053.
   PubMed Web of Science ®Google Scholar
• Lee CH, Lu JJ, Bartlett MS, et al. Nucleotide sequence variation in Pneumocystis carinii strains that infect humans. J Clin Microbiol 1993; 31: 754–757.
   PubMedGoogle Scholar
• Wakefield AE, Fritscher CC, Malin AS, et al. Genetic diversity in human derived Pneumocystis carinii isolates from four geographical locations shown by analysis of mitochondrial rRNA gene sequences. J Clin Microbiol 1994; 32: 2959–2961.
   PubMedGoogle Scholar
• Esteves F, Montes-Cano MA, de la Horra C, et al. Pneumocystis jirovecii multilocus genotyping profiles in patients from Portugal and Spain. Clin Microbiol Infect 2008; 14: 356–362.
   PubMed Web of Science ®Google Scholar
• Montes-Cano MA, de la horra C, Martin-Juan J, et al. Pneumocystis jiroveci genotypes in the Spanish population. Clin Infect Dis 2004; 39: 123–128.
   PubMed Web of Science ®Google Scholar
• Beard CB, de la Horra C, Martin-Juan J, et al. Genetic variation in Pneumocystis carinii isolates from different geographic regions: implications for transmission. Emerg Infect Dis 2000; 6: 265–272.
   PubMed Web of Science ®Google Scholar
• Miller RF, Lindley AR, Copas A, et al. Genotypic variation in Pneumocystis jirovecii isolates in Britain. Thorax 2005; 60: 679–682.
   PubMedGoogle Scholar
• Hauser PM, Nahimana A, Taffe P, et al. Interhuman transmission as a potential key parameter for geographical variation in the prevalence of Pneumocystis jirovecii dihydropteroate synthase mutations. Clin Infect Dis 2010; 51: e28–33.
   PubMed Web of Science ®Google Scholar
• Robberts FJ, Chalkley LJ, Weyer K, Goussard P, Liebowitz LD. Dihydropteroate synthase and novel dihydrofolate reductase gene mutations in strains of Pneumocystis jirovecii from South Africa. J Clin Microbiol 2005; 43: 1443–1444.
   PubMedGoogle Scholar