Publication Cover
Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 21, 2010 - Issue 3-4
180
Views
15
CrossRef citations to date
0
Altmetric
Mitogenome Announcements

The mitochondrial genome of the Japanese skeleton shrimp Caprella mutica (Amphipoda: Caprellidea) reveals a unique gene order and shared apomorphic translocations with Gammaridea

&
Pages 77-86 | Received 30 Oct 2009, Accepted 30 Apr 2010, Published online: 26 Aug 2010

References

  • Amer SA, Kumazawa Y. 2005. Mitochondrial genome of Pogona vitticepes (Reptilia; Agamidae): Control region duplication and the origin of Australasian agamids. Gene. 346:249–256.
  • Ashton GV, Willis KJ, Cook EJ, Burrows M. 2007. Distribution of the introduced amphipod, Caprella mutica Schurin, 1935 (Amphipoda: Caprellida: Caprellidae) on the west coast of Scotland and a review of its global distribution. Hydrobiologia. 590:31–41.
  • Avise JC. 2000. Phylogeography: The history and formation of species. Cambridge, MA: Harvard University Press.
  • Bauza-Ribot MM, Jaume D, Juan C, Pons J. 2009. The complete mitochondrial genome of the subterranean crustacean Metacrangonyx longipes (Amphipoda): A unique gene order and extremely short control region. Mitochondrial DNA. 20:88–99.
  • Boore JL. 1999. Animal mitochondrial genomes. Nucleic Acids Res. 27:1767–1780.
  • Boore JL, Brown WM. 2000. Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: Sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa. Mol Biol Evol. 17:87–106.
  • Boore JL, Lavrov DV, Brown WM. 1998. Gene translocation links insects and crustaceans. Nature. 392:667–668.
  • Cook CE, Yue Q, Akam M. 2005. Mitochondrial genomes suggest that hexapods and crustaceans are mutually paraphyletic. Proc Biol Sci. 272:1295–1304.
  • Dowton M, Castro LR, Austin AD. 2002. Mitochondrial gene rearrangements as phylogenetic characters in the invertebrates: The examination of genome “morphology”. Invertebr Syst. 16:345–356.
  • Eberhard JR, Wright TF, Bermingham E. 2001. Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona. Mol Biol Evol. 18:1330–1342.
  • Gibb GC, Kardailsky O, Kimball RT, Braun EL, Penny D. 2007. Mitochondrial genomes and avian phylogeny: Complex characters and resolvability without explosive radiations. Mol Biol Evol. 24:269–280.
  • Hall TA. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser. 41:95–98.
  • Hassanin A. 2006. Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution. Mol Phylogenet Evol. 38:100–116.
  • Hassanin A, Leger N, Deutsch J. 2005. Evidence for multiple reversals of asymmetric mutational constraints during the evolution of the mitochondrial genome of metazoa, and consequences for phylogenetic inferences. Syst Biol. 54:277–298.
  • Helfenbein KG, Fourcade HM, Vanjani RG, Boore JL. 2004. The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes. Proc Natl Acad Sci USA. 101:10639–10643.
  • Hwang UW, Park CJ, Yong TS, Kim W. 2001. One-step PCR amplification of complete arthropod mitochondrial genomes. Mol Phylogenet Evol. 19:345–352.
  • Kilpert F, Podsiadlowski L. 2006. The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features. BMC Genomics. 7:241.
  • Kilpert F, Podsiadlowski L. 2010. The Australian fresh water isopod (Phreatoicidea: Isopoda) allows insights into the early mitogenomic evolution of isopods. Comp Biochem Physiol D. 5:36–44.
  • Laslett D, Canback B. 2008. ARWEN: A program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics. 24:172–175.
  • Laubitz DR. 1993. Caprellidea (Crustacea: Amphipoda): Towards a new synthesis. J Nat Hist. 27:965–976.
  • Lavrov DV. 2007. Key transitions in animal evolution: A mitochondrial DNA perspective. Integr Comp Biol. 47:734–743.
  • Lavrov DV, Lang BF. 2005. Transfer RNA gene recruitment in mitochondrial DNA. Trends Genet. 21:129–133.
  • Lavrov DV, Boore JL, Brown WM. 2000. The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus. Mol Biol Evol. 17:813–824.
  • Lowe TM, Eddy SR. 1997. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955–964.
  • Martin JW, Davis GE. 2001. An updated classification of the recent Crustacea. Los Angeles, CA: Natural History Museum of Los Angeles County.i–viii.
  • Moritz C, Dowling TE, Brown WM. 1987. Evolution of animal mitochondrial-DNA—relevance for population biology and systematics. Annu Rev Ecol Evol S. 18:269–292.
  • Ojala D, Montoya J, Attardi G. 1981. tRNA punctuation model of RNA processing in human mitochondria. Nature. 290:470–474.
  • Okimoto R, Macfarlane JL, Wolstenholme DR. 1990. Evidence for the frequent use of TTG as the translation initiation codon of mitochondrial protein genes in the nematodes, Ascaris suum and Caenorhabditis elegans. Nucleic Acids Res. 18:6113–6118.
  • Papillon D, Perez Y, Caubit X, Le PY. 2004. Identification of chaetognaths as protostomes is supported by the analysis of their mitochondrial genome. Mol Biol Evol. 21:2122–2129.
  • Perna NT, Kocher TD. 1995. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J Mol Evol. 41:353–358.
  • Podsiadlowski L, Bartolomaeus T. 2005. Organization of the mitochondrial genome of mantis shrimp Pseudosquilla ciliata (Crustacea: Stomatopoda). Mar Biotechnol. 7:618–624.
  • Podsiadlowski L, Bartolomaeus T. 2006. Major rearrangements characterize the mitochondrial genome of the isopod Idotea baltica (Crustacea: Peracarida). Mol Phylogenet Evol. 40:893–899.
  • Rawlings TA, Collins TM, Bieler R. 2003. Changing identities: tRNA duplication and remolding within animal mitochondrial genomes. Proc Natl Acad Sci USA. 100:15700–15705.
  • Roehrdanz RL, Degrugillier ME, Black WCI. 2002. Novel rearrangements of arthropod mitochondrial DNA detected with long-PCR: Applications to arthropod phylogeny and evolution. Mol Biol Evol. 19:841–849.
  • Rubinoff D, Holland BS. 2005. Between two extremes: Mitochondrial DNA is neither the panacea nor the nemesis of phylogenetic and taxonomic inference. Syst Biol. 54:952–961.
  • Valverde JR, Batuecas B, Moratilla C, Marco R, Garesse R. 1994. The complete mitochondrial DNA sequence of the crustacean Artemia franciscana. J Mol Evol. 39:400–408.
  • Wolstenholme DR. 1992. Animal mitochondrial DNA: Structure and evolution. Int Rev Cytol. 141:173–216.
  • Xia X, Xie Z. 2001. DAMBE: Software package for data analysis in molecular biology and evolution. J Hered. 92:371–373.
  • Yamauchi MM, Miya MU, Machida RJ, Nishida M. 2004. PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from kuruma prawn (Marsupenaeus japonicus). Mar Biotechnol. 6:419–429.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.