DNA barcoding of morid cods reveals deep divergence in the antitropical Halargyreus johnsoni but little distinction between Antimora rostrata and Antimora microlepis

References

• Allain V, Biseau A, Kergoat B. 2003. Preliminary estimates of French deepwater fishery discards in the Northeast Atlantic Ocean. Fish Res. 60:185–192.
   Web of Science ®Google Scholar
• Cohen DH. 1973. The gadoid fish genus Halargyreus (Family Eretmophoridae) in the southern hemisphere. J R Soc NZ. 3:629–634.
   Google Scholar
• Cohen DM, Inada T, Iwamoto T, Scialabba N. 1990. Gadiform fishes of the world (Order Gadiformes). An annotatted and illustrated catalogue of cods, hakes, grenadiers and other gadiform fishes known to date. FAO Fish Synop. 125:442 FAO Rome.
   Google Scholar
• Devine JA, Baker KD, Haedrich RL. 2006. Deep-sea fisheries qualify as endangered. Nature. 439:29.
   PubMed Web of Science ®Google Scholar
• Eschmeyer WN, Fricke R. 2009. Catalog of fishes electronic version, 9 September [Online]. Available at: http://research.calacademy.org/ichthyology/catalog/fishcatmain.asp[accessed 10 May 2010].
   Google Scholar
• Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:783–791.
   PubMed Web of Science ®Google Scholar
• Froese R, Pauly D. 2006. FishBase [Online]. Available at: http://www.fishbase.org [accessed 10 May 2010].
   Google Scholar
• Gon O, Heemstra P. 1990. Fishes of the Southern Ocean. Grahamstown: J.L.B. Smith Institute of Ichthyology462.
   Google Scholar
• Gordon J, Merrett N, Bergstad O, Swan S. 1996. A comparison of the deep-water demersal fish assemblages of the Rockall Trough and Porcupine Seabight, eastern North Atlantic: Continental slope to rise. J Fish Biol. 49:217–238.
   Web of Science ®Google Scholar
• Günther A. 1862. Catalogue of the fishes in the British Museum. Catalogue of the Acanthopterygii, Pharyngognathi and Anacanthini in the collection of the British Muesum. Cat Fish Br Mus. 4:1–534.
   Google Scholar
• Hebert PDN, Ratnasingham S, deWaard JR. 2003. Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B Biol Sci. 270:S96–S99.
   PubMed Web of Science ®Google Scholar
• Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM. 2004. Identification of birds through DNA barcodes. PLoS Biol. 2:e312.
   PubMed Web of Science ®Google Scholar
• Hoff GR. 2002. New records of the slender codling Halargyreus johnsonii Günther, 1862 from the eastern Bering Sea. Alsk Fish Res Bull. 9:65–67.
   Google Scholar
• Hubbs C, Lagler K. 1949. Fishes of the Great Lakes Region. Bloomfield Hills, MI: Cranbrook Press186.
   Google Scholar
• Ivanova NV, deWaard JR, Hebert PDN. 2006. An inexpensive, automation-friendly protocol for recovering high-quality DNA. Mol Ecol Notes. 6:998–1002.
   Web of Science ®Google Scholar
• Ivanova NV, Zemlak TS, Hanner RH, Hebert PDN. 2007. Universal primer cocktails for fish DNA barcoding. Mol Ecol Notes. 7:544–548.
   Web of Science ®Google Scholar
• Iwamoto T. 1975. The abyssal fish Antimora rostrata. Comp Biochem Physiol. 52B:7–11.
   Google Scholar
• Kulka D, Simpson M, Inkpen T. 2003. Distribution and biology of Blue Hake (Antimora rostrata Guenther 1878) in the Northwest Atlantic with comparison to adjacent areas. J Northwest Atl Fish Sci. 31:299–318.
   Google Scholar
• McClatchie S, Coombs RF. 2004. Spatial variability of orange roughy around the Northwest Hills on the Chatham Rise, New Zealand. Deep Sea Res. 52:589–603.
   Google Scholar
• Paulin C. 1983. A revision of the family Moridae (Pisces: Anacanthini) within the New Zealand region. Rec Natl Mus NZ. 2:81–126.
   Google Scholar
• Paulin C, Stewart A, Roberts C, McMillan P. 2001. New Zealand fishes: A complete guide. Wellington: Te Papa Press, 19, 279.
   Google Scholar
• Posada D. 2008. jModelTest: Phylogenetic model averaging. Mol Biol Evol. 25:1253–1256.
   PubMed Web of Science ®Google Scholar
• Ratnasingham S, Hebert PDN. 2007. The barcode of life database. Mol Ecol Notes. 7:355–364.
   PubMed Web of Science ®Google Scholar
• Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:1572–1574.
   PubMed Web of Science ®Google Scholar
• Small GJ. 1981. A review of the bathyal fish genus Antimora (Moridae: Gadiformes). Proc Calif Acad Sci. 42:341–348.
   Google Scholar
• Smith PJ, Steinke D, McMillan P, McVeagh SM, Struthers CD. 2008. DNA database for commercial marine fish. NZ Aquat Environ Biodivers Rep. 22:62.
   Google Scholar
• Steinke D, Zemlak TS, Boutillier JA, Hebert PDN. DNA barcoding of Pacific Canada's fishes. Mar Biol. 2009a; 156:2641–2647.
   Web of Science ®Google Scholar
• Steinke D, Zemlak TS, Hebert PDN. Barcoding nemo: DNA-based identifications for the ornamental fish trade. PLoS One. 2009b; 4:e6300.
   PubMed Web of Science ®Google Scholar
• Swofford DL. 2003. PAUP^*: Phylogenetic analysis using parsimony (^*and other methods). Sunderland, MA: Sinauer Associates Version 4.
   Google Scholar
• Tamura K, Nei M. 1993. Estimating the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol. 10:512–526.
   PubMed Web of Science ®Google Scholar
• Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596–1599.
   PubMed Web of Science ®Google Scholar
• Ward RD, Zemlak TS, Ines BH, Last PR, Hebert PDN. 2005. DNA barcoding Australia's fish species. Philos Trans R Soc Lond Ser B. 360:1847–1857.
   PubMed Web of Science ®Google Scholar
• Ward RD, Costa FO, Holmes BH, Steinke D. 2008. DNA barcoding shared fish species from the North Atlantic and Australasia: Minimal divergence for most taxa but a likely two species for both Zeus faber (John dory) and Lepidopus caudatus (silver scabbardfish). Aquat Biol. 3:71–78.
   Web of Science ®Google Scholar
• Ward RD, Hanner R, Hebert PDN. 2009. The campaign to DNA barcode all fishes, FISH-BOL. J Fish Biol. 74:329–356.
   PubMed Web of Science ®Google Scholar
• Zemlak TS, Ward RD, Connell AD, Holmes BH, Hebert PDN. 2009. DNA barcoding reveals overlooked marine fishes. Mol Ecol Resour. 9:237–242.
   PubMed Web of Science ®Google Scholar