Five years of FISH-BOL: Brief status report

References

• Baldwin CC, Mounts JH, Smith DG, Weigt LA. 2009. Genetic identification and color descriptions of early life-history stages of Belizean Phaeoptyx and Astrapogon (Teleostei: Apogonidae) with comments on identification of adult Phaeoptyx. Zootaxa. 2008:1–22.
   Google Scholar
• Bucklin A, Steinke D, Blanco-Bercial L. 2011. DNA barcoding of marine metazoa. Ann Rev Mar Sci. 3:18.1–18.38.
   Web of Science ®Google Scholar
• Buhay JE. 2009. “COI-Like” sequences are becoming problematic in molecular systematic and DNA barcoding studies. J Crust Biol. 29:96–110.
   Web of Science ®Google Scholar
• Cohen NJ, Deeds JR, Wong ES, Hanner R, Yancy HF, White KD, Thompson TM, Wahl M, Pham TD, Guichard FM, Huh I, Austin C, Dizikes G, Gerber SI. 2009. Public health response to puffer fish (tetrodotoxin) poisoning from mislabeled product. J Food Prot. 72:810–817.
   PubMed Web of Science ®Google Scholar
• Dawnay N, Ogden R, McEwing R, Carvalho GR, Thorpe RS. 2007. Validation of the barcoding gene COI for use in forensic genetic species identification. Forensic Sci Int. 173:1–6.
   PubMed Web of Science ®Google Scholar
• Diaz de Astarloa JM, Mabragana E, Hanner R, Figueroa DE. 2008. Morphological and molecular evidence for a new species of longnose skate (Rajiformes: Rajidae: Dipturus) from Argentinean waters based on DNA barcoding. Zootaxa. 1921:35–46.
   Web of Science ®Google Scholar
• Ekrem T, Willassen E, Stur E. 2007. A comprehensive DNA sequence library is essential for identification with DNA barcodes. Mol Phylogenet Evol. 43:530–542.
   PubMed Web of Science ®Google Scholar
• Eschmeyer WN. 2010. Catalog of fishes. Available at: http://research.calacademy.org/research/ichthyology/catalog/speciesbyfamily.asp.
   Google Scholar
• Floyd R, Abebe E, Papert A, Blaxter M. 2002. Molecular barcodes for soil nematode identification. Mol Ecol. 11:839–850.
   PubMed Web of Science ®Google Scholar
• Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol. 3:294–299.
   PubMedGoogle Scholar
• Hajibabaei M, Smith MA, Janzen DH, Rodriguez JJ, Whitfield JB, Hebert PDN. 2006. A minimalist barcode can identify a specimen whose DNA is degraded. Mol Ecol Notes. 6:959–964.
   Web of Science ®Google Scholar
• Harris DJ. 2003. Can you bank on GenBank?. Trends Ecol Evol. 18:317–319.
   Web of Science ®Google Scholar
• Hebert PDN, Cywinska A, Ball SL, DeWaard JR. 2003. Biological identifications through DNA barcodes. Proc R Soc Lond B Biol Sci. 270:313–321.
   PubMed Web of Science ®Google Scholar
• Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W. 2004. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA. 101:14812–14817.
   PubMed Web of Science ®Google Scholar
• Holmes BH, Steinke D, Ward RD. 2009. Identification of shark and ray fins using DNA barcoding. Fish Res. 95:280–288.
   Web of Science ®Google Scholar
• Hubert N, Hanner R, Holm E, Mandrak NE, Taylor E, Burridge M, Watkson D, Dumont P, Curry A, Bentzen P, Zhang J, April J, Bernatchez L. 2008. Identifying Canadian freshwater fishes through DNA barcodes. PLoS ONE. 3:e2490.
   PubMed Web of Science ®Google Scholar
• Ivanova NV, DeWaard JR, Hebert PDN. 2006. An inexpensive, automation-friendly protocol for recovering high-quality DNA. Mol Ecol Notes. 6:998–1002.
   Web of Science ®Google Scholar
• Ivanova NV, Zemlak TS, Hanner R, Hebert PDN. 2007. Universal primer cocktails for fish DNA barcoding. Mol Ecol Notes. 7:544–548.
   Web of Science ®Google Scholar
• Mecklenburg CW, Møller PR, Steinke D. 2010. Biodiversity of arctic marine fishes: Taxonomy and zoogeography Mar Biodiv in press.
   Google Scholar
• Messing J. 1983. New M13 vectors for cloning. Meth Enzymol. 101:20–78.
   PubMed Web of Science ®Google Scholar
• Meusnier I, Singer G, Landry J, Hickey D, Hebert P, Hajibabaei M. 2008. A universal DNA mini-barcode for biodiversity analysis. BMC Genomics. 9:214.
   PubMed Web of Science ®Google Scholar
• Monk RR, Baker RJ. 2001. e-Vouchers and the use of digital imagery in Natural History Collections. Museology of the Museum of Texas Tech University. 10:1–8.
   Google Scholar
• Padial J, Miralles A, De la Riva I, Vences M. 2010. The integrative future of taxonomy. Front Zool. 7:16.
   PubMed Web of Science ®Google Scholar
• Rasmussen RS, Morrissey MT, Hebert PDN. 2009. DNA barcoding of commercially important salmon and trout species (Oncorhynchus and Salmo) from North America. J Agric Food Chem. 57:8379–8385.
   PubMed Web of Science ®Google Scholar
• Ratnasingham S, Hebert P. 2007. BOLD: The Barcode of Life Data System (http://www.barcodinglife.org). Mol Ecol Notes. 7:355–364.
   PubMed Web of Science ®Google Scholar
• Smith PJ, McVeagh MS, Steinke D. 2008. Application of DNA barcoding for the identification of smoked fish products. J Fish Biol. 72:464–471.
   Web of Science ®Google Scholar
• Song H, Buhay JE, Whiting MF, Crandall KA. 2008. Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are co-amplified. Proc Natl Acad Sci USA. 105:13486–13491.
   PubMed Web of Science ®Google Scholar
• Sriwattanarothai N, Steinke D, Ruenwongsa P, Hanner R, Panijpan B. 2010. Molecular and morphological evidence supports the species status of the Mahachai fighter (Betta sp. Mahachai) and reveals new species of Betta from Thailand. J Fish Biol. 77:414–424.
   PubMed Web of Science ®Google Scholar
• Steinke D, Zemlak TS, Boutillier JA, Hebert PDN. DNA barcoding Pacific Canada's fishes. Mar Biol. 2009a; 156:2641–2647.
   Web of Science ®Google Scholar
• Steinke D, Zemlak TS, Hebert PDN. Barcoding Nemo: DNA-based identifications for the ornamental fish trade. PLoS One. 2009b; 4:e6300.
   PubMed Web of Science ®Google Scholar
• Sword GA, Senior LB, Gaskin JF, Joern A. 2007. Double trouble for grasshopper molecular systematics: Intra-individual heterogeneity of both mitochondrial 12S-valine-16S and nuclear internal transcribed spacer ribosomal DNA sequences in Hesperotettix viridis (Orthoptera; Acrididae). Syst Entomol. 32:420–428.
   Web of Science ®Google Scholar
• Thalmann O, Hebler J, Poinar HN, Paabo S, Vigilant L. 2004. Unreliable mtDNA data due to nuclear insertions: A cautionary tale from analysis of humans and other great apes. Mol Ecol. 13:321–335.
   PubMed Web of Science ®Google Scholar
• Valdez-Moreno M, Ivanova NV, Elias-Gutierrez M, Contreras-Balderas S, Hebert PDN. 2009. Probing diversity in freshwater fishes from Mexico and Guatemala with DNA barcodes. J Fish Biol. 74:377–402.
   PubMed Web of Science ®Google Scholar
• Venkatesh B, Dandona N, Brenner S. 2006. Fugu genome does not contain mitochondrial pseudogenes. Genomics. 87:307–310.
   PubMed Web of Science ®Google Scholar
• Victor BC. 2007. Coryphopterus kuna, a new goby (Perciformes: Gobiidae: Gobiinae) from the western Caribbean, with the identification of the late larval stage and an estimate of the pelagic larval duration. Zootaxa. 1526:51–61.
   Google Scholar
• Ward RD, Woodwark M, Skininski DOF. 1994. A comparison of genetic diversity levels in marine, freshwater and anadromous fish. J Fish Biol. 44:213–232.
   Web of Science ®Google Scholar
• Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN. 2005. DNA barcoding Australia's fish species. Phil Trans R Soc B Biol Sci. 360:1847–1857.
   PubMed Web of Science ®Google Scholar
• Ward RD, Holmes BH, White WT, Last PR. 2008. DNA barcoding Australasian chondrichthyans: Results and potential uses in conservation. Mar Freshw Res. 59:57–71.
   Web of Science ®Google Scholar
• Ward RD, Hanner R, Hebert PDN. 2009. The campaign to DNA barcode all fishes, FISH-BOL. J Fish Biol. 74:329–356.
   PubMed Web of Science ®Google Scholar
• Wheeler TA. The role of voucher specimens in validating faunistic and ecological research. 2003 Biological Survey of Canada (Terrestrial Arthropods) Document Series No. 9. 21 p. ISBN 0-9689321-2-6.
   Google Scholar
• Wong EHK, Hanner R. 2008. DNA barcoding detects market substitution in North American seafood. Food Res Int. 41:828–837.
   Web of Science ®Google Scholar
• Wong E, Shivji M, Hanner R. 2009. Identifying sharks with DNA barcodes: Assessing the utility of a nucleotide diagnostic approach. Mol Ecol Res. 9:243–256.
   PubMed Web of Science ®Google Scholar
• Yancy HF, Zemlak TS, Mason JA, Washington JD, Tenge BJ, Nguyen N-L, Barnett JD, Savary WE, Hill WE, Moore MM, Fry FS, Randolph SC, Rogers PL, Hebert PDN. 2008. The potential use of DNA barcodes in regulatory science: Applications of the regulatory fish encyclopedia. J Food Prot. 71:210–217.
   PubMed Web of Science ®Google Scholar