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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 22, 2011 - Issue 3
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Full Length Research Papers

Divergence at Cyt-b and Co-1 mtDNA genes on different taxonomic levels and genetics of speciation in animals

Pages 55-65 | Received 12 Oct 2010, Accepted 10 Mar 2011, Published online: 23 Jun 2011

References

  • Altukhov YuP. 1983. Geneticheskie protsessy v populyatsiyakh (Genetic Processes in Populations). Moscow: Nauka Publ.
  • Altukhov YuP. 1989. Genetic processes in populations. Moscow: Nauka.
  • Altukhov YuP. 1999. Genetic processes in populations. Moscow: Nauka.
  • Aronshtam AA, Borkin LYa, Pudovkin AI. 1977. Isozymes in population and evolutionary geneticsGenetika izofermentov [Genetics of Isozymes]. Moscow: Nauka.199–249.
  • Avise JC. 1994. Molecular markers, natural history and evolution. New York: Chapman & Hall.
  • Avise JC. 2000. Phylogeography: The history and formation of species. Cambridge: Harvard University Press.
  • Avise JC, Aquadro CF. 1982. A comparative summary of genetic distances in the vertebrates: Pattern and correlations. Evol Biol. 15:151–185.
  • Avise JC, Walker D. 1999. Species realities and numbers in sexual vertebrates: Perspectives from an asexually transmitted genome. Evolution. 9 3: 992–995.
  • Brower AVZ. 1999. Delimitation of phylogenetic species with DNA sequences: A critique of Davis and Nixon's population aggregation analysis. Syst Biol. 48:199–213.
  • Creer S, Malhotra A, Thorpe RS. 2003. Assessing the phylogenetic utility of four mitochondrial genes and a nuclear intron in the Asian pit viper genus, Trimeresurus: Separate, simultaneous, and conditional data combination analyses. Mol Biol Evol. 20 8: 1240–1251.
  • Davis JI, Nixon KC. 1992. Populations, genetic-variation, and the delimitation of phylogenetic species. Syst Biol. 41:421–435.
  • Dobzhansky Th. 1955. Evolution, genetics and man. New York/London: John Wiley & Sons/Chapman & Hall.398.
  • Duftner N, Koblmuller S, Sturmbauer C. 2005. Evolutionary relationships of the Limnochromini, a tribe of Benthic deepwater cichlid fish endemic to Lake Tanganyika. East Africa. J Mol Evol. 60 3: 277–289.
  • Felsenstein J. 2004. Inferring phylogenies. Sunderland, MA: Sinauer Associates.
  • Ferguson JWH. 2002. On the use of genetic divergence for identifying species. Biol J Linn Soc. 75 4: 509–516.
  • Garcia-Machado E, Chevalier-Monteagudo PP, Solignac M. 2004. Lack of mtDNA differentiation among Hamlets (Hypoplectrus, Serranidae). Mar Biol. 144:147–152.
  • Graur D, Li WH. 1999. Fundamentals of molecular evolution. Sunderland, MA: Sinauer Associates.
  • Hall B. 2001. Phylogenetic trees made easy: A how-to manual for molecular biologists. Sunderland, MA: Sinauer Associates.
  • Hebert PDN, Givinska A, Ball SL, deWaard JA. Biological identification through DNA barcodes. Proc R Soc Lond B. 2002a; 270 1512: 02PB0653.1–02PB0653.9.
  • Hebert PDN, Ratnasingham S, deWaard JA. Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proc R Soc Lond B. 2002b; 270 1512: 03BL0066.S1–03BL0066.S4.
  • Hedgecock DPopulation genetic bases for improving cultured crustaceans1986 FIFAC/FAO Symposium on Selection, Hybridization and Genetic Engineering in Aquaculture of Fish and Shellfish for Consumption and Restocking. Bordeaux.
  • Hedgecock D, Nelson C. 1981. Genetic variation of enzymes and adaptive strategies in crustaceansGenetika i razmnozhenie morskikh zhivotnykh [Genetics and Reproduction of Marine Animals]. Vladivostok: Dal'nevost. Nauchn. Tsentr Akad. Nauk SSSR.105–129.
  • Johns GC, Avise JC. 1998. A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Mol Biol Evol. 15 11: 1481–1490.
  • Kartavtsev YGenetic aspects of speciation, species differentiation and biodiversity200027 Proceedings of the International Meeting of Biodiversity in Asia. September. Tokyo.
  • Altukhov YuP. 1989. Genetic processes in populations. 2nd ed., Moscow: Nauka.
  • Kartavtsev YPhAnalysis of sequence diversity at mitochondrial genes on different taxonomic levels. Applicability of DNA based distance data in genetics of speciation and phylogenetics. In: Mahoney CL, Springer DA. editors. Genetic diversity. New York: Nova Science Publishers2009a1–50.
  • Kartavtsev YPhMolekulyarnaya evolyutsiya i populyatsionnaya genetika [Molecular Evolution and Population Genetics]. Vladivostok: Dal'nevost. Gos. Univ. [Far Eastern State University Publ.]2009b280 (Content, chapter abstracts, and headings in English.).
  • Kartavtsev YPh. 2011. Sequence divergence at mitochondrial genes in animals. Applicability of DNA data in genetics of speciation, phylogenetics and molecular ecology. Mar Genomics. 49:71–81.
  • Kartavtsev YP, Lee J-S. 2006. Analysis of nucleotide diversity at genes Cyt-b and Co-1 on population, species, and genera levels Russian. J. Genetics. 42 4: 341–362 (In Russian, Translated in English).
  • Kartavtsev YP, Hanzawa N. 2007. Inferences in Leuciscinae (Pisces Cyprinidae) phylogeny and taxonomy based on cytochrome b sequence distances and on enzyme loci diversity. Korean J Genet. 29 4: 427–435.
  • Kartavtsev YuF, Sviridov VV, Hanzawa N, Sasaki T. 2002. Genetic divergence of Far-Eastern dace species. Russ J Genet. 38 11: 1285–1297.
  • Kartavtsev YP, Lee Y-M, Jung S-O, Byeon H-K, Son Y, Lee J-S. The complete mitochondrial genome of the bullhead torrent catfish, Liobagrus obesus (Siluriformes, Amblycipididae): Genome description and phylogenetic considerations inferred from the Cyt b gene. Gene. 2007a; 396:13–27.
  • Kartavtsev YP, Park T-J, Vinnikov KA, Ivankov VN, Sharina SN, Lee J-S. Cytochrome b (Cyt-b) gene sequences analysis in six flatfish species (Pisces, Pleuronectidae), with phylogenetic and taxonomic insights. Mar Biol. 2007b; 152 4: 757–773.
  • Kartavtsev YPh, Sharina SN, Goto T, Chichvarkhin AY, Balanov AA, Vinnikov KA, Ivankov VN, Hanzawa N. 2008. Cytochrome oxidase 1 (Co-1) gene sequence analysis in six flatfish species (Teleostei Pleuronectidae) of Russia Far East with inferences in phylogeny and taxonomy. Mitochondrial DNA. 19 6: 479–489.
  • Kartavtsev YPh, Sharina SN, Goto T, Balanov AA, Hanzawa N. Sequence diversity at cytochrome oxidase 1 (Co-1) gene among sculpins (Scorpaeniformes, Cottidae) and some other scorpionfish of Russia Far East with phylogenetic and taxonomic insights. Genes Genomics. 2009a; 31 2: 191–205.
  • Kartavtsev YPh, Sharina SN, Goto T, Rutenko OA, Pitruk DL, Semenchenko AA, Hanzawa N. Sequence diversity at cytochrome oxidase 1 (Co-1) gene among pricklebacks (Actinopterigii, Stichaeidae) and some other percoids fishes of Russia Far East with inferences in phylogeny and taxonomy. Aquat Biol. 2009b; 8 1: 95–103.
  • Lewontin RC. 1978. Geneticheskie osnovi evolutsii. Moscow: Mir [Transl. (1974). The Genetic Basis of Evolutionary Change. New York: Columbia Univ.].
  • Li WH. 1997. Molecular evolution. Sunderland, MA: Sinauer Associates.
  • Li WH, Zarkhih A. 1995. Statistical tests of DNA phylogenies. Syst Biol. 44:49–63.
  • Machordom A, Macpherson E. 2004. Rapid radiation and cryptic speciation in squat lobsters of the genus Munida (Crustacea, Decapoda) and related genera in the South West Pacific: Molecular and morphological evidence. Mol Phylogenet Evol. 33 2: 259–279.
  • Mayr E. 1963. Animal species and evolution. Cambridge: Harvard University Press.
  • Nei M. 1972. Genetic distances between populations. Am Nat. 106 949: 283–292.
  • Nei M. 1975. Molecular population genetics and evolution. Amsterdam: North Holland.
  • Nei M. 1987. Molecular evolutionary genetics. New York: Columbia University Press.
  • Nei M, Koehn R. 1983. Evolution of genes and proteinsNei M, Koehn RK. Sunderland, MA: Sinauer Associates.
  • Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. New York: Oxford University Press.
  • Nevo E, Beiles A, Ben-Shlomo R. 1984. The evolutionary significance of genetic diversity: Ecological, demographic and life history correlates. In: Mani GS. editors. Evolutionary dynamics of genetic diversity Lect Notes BiomathVol. 53. 4–213.
  • Pasekov VP. 1983. Genetic distances Geneticheskie rasstoyaniya. Itogi Nauki Tekhn Obshch Genet. 8:4–75.
  • Rutaisire J, Boot AJ, Masemba C, Nyakaana S, Muwanika VB. 2004. Evolution of Labeo victorianus predates the Pleistocene desiccation of Lake Victoria: Evidence from mitochondrial DNA sequence variation. S Afr J Sci. 100 11–12: 607–608.
  • Ryman NF, Allendorf FW, Stahl G. 1979. Reproductive isolation with little genetic divergence in sympatric populations of brown trout (Salmo trutta). Genetics. 92:247–262.
  • Sanderson MJ, Shaffer HB. 2002. Troubleshooting molecular phylogenetic analyses. Annu Rev Ecol Syst. 33:49–72.
  • Sasaki T, Kartavtsev YP, Uematsu T, Sviridov VV, Hanzawa N. 2007. Phylogenetic independence of Far Eastern Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analysis. Gene Genet Syst. 82:329–340.
  • Sites JW, Marshall JC. 2004. Operational criteria for delimiting species. Annu Rev Ecol Evol Syst. 35:199–227.
  • Statsoft. 2001. Statistica for windows Statistica 6: Users Guide. Tulsa: StatSoft.
  • Swofford DL, Olsen GJ, Waddel PJ, Hillis DM. 1996. Phylogenetic inference. In: Hillis DM, Moritz C, Mable B. editors. Molecular systematics. Sunderland, MA: Sinauer Associates407–514.
  • Takehana Y, Nagai N, Matsuda M, Tsuchiya K, Sakaizumi M. 2003. Geographic variation and diversity of the Cytochrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zool Sci. 20 10: 1279–1291.
  • Templeton AR. 1981. Mechanisms of speciation—population genetic approach. Annu Rev Ecol Syst. 12:23–48.
  • Templeton AR. 2001. Using phylogeographic analyses of gene trees to test species status and processes. Mol Ecol. 10 3: 779–791.
  • Thorpe JP. 1983. Enzyme variation, genetic distance and evolutionary divergence in relation to levels of taxonomic variation. In: Oxford JS, Rollinson D. editors. Protein polymorphism: Adaptive and taxonomic significance. London: Academic131–152.
  • Ward RD, Skibinski DOF, Woodwark M, . 1992. Protein heterozygosity, protein structure, and taxonomic differentiation. Evolutionary Biology. 26:73–159.
  • Ward RD, Zemlak TS, Innes BH, Last PA, Hebert PDN. 2005. DNA barcoding Australia fish species. Philos Trans R Soc Lond B. 360:1847–1857.
  • Wiens JJ, Penkrot TA. 2002. Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). Syst Biol. 51 1: 69–91.
  • Zhivotovsky LA. 1983. Statistical methods of analyzing gene frequencies in natural populations. Itogi Nauki Tekhn Obshch Genet. 8:76–104.

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