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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 23, 2012 - Issue 1
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Full Length Research Papers

Molecular identification of three Ompok species using mitochondrial COI gene

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Pages 20-24 | Received 05 Jul 2011, Accepted 21 Nov 2011, Published online: 01 Feb 2012

References

  • An HS, Jee YJ, Min KS, Kim BL, Han SJ. 2005. Phylogenetic analysis of six pacific abalone (Haiotidae) based on DNA sequences of 16S rRNA and cytochrome c oxidase subunit I mitochondrial genes. Mar Biotechnol. 7:373–380.
  • Barlett SE, Davidson WS. 1991. Identification of tuna species in the genus Thunnus by the polymerase chain reaction and direct sequence analysis of their mitochondrial cytochrome b genes. Can J Fish Aquat Sci. 48:309–317.
  • Bermingham E, Lessios HA. 1993. Rate variation of protein and mtDNA evolution as revealed by sea urchins separated by the Isthmus of Panama. Proc Natl Acad Sci USA. 90:2734–2738.
  • Bernardi G, Robertson DR, Clifton KE, Azurro E. 2000. Molecular systematics, zoogeography and evolutionary ecology of the Atlantic parrotfish genus Sparisoma. Mol Biol Evol. 15:292–300.
  • Brown WM. 1985. The mitochondrial genome of animals: Molecular evolutionary genetics. In: MacIntyre RJ. editors. Molecular evolutionary genetics. New York: Plenum Press95–130.
  • Eck RV, Dayhoff MO. 1966. Atlas of protein sequence and structure. Maryland: National Biomedical Research Foundation. Silver Springs.
  • Felsenstein J. 1993. PHYLIP (phylogeny inference package) version 3.50 distributed by the author. Seattle: Department of Genetics, University of Washington.
  • Froese R, Pauly D. 2005. FishBaseWorld wide web electronic publication International Center for Living Aquatic Resources Management (ICLARM), Los Banos, Philippines. www.fishbase.org, version (07/2005).
  • Hardman M. 2004. The phylogenetic relationships among Noturus catfishes (Siluriformes: Ictaluridae) as inferred from mitochondrial gene cytochrome b and nuclear recombination activating gene 2. Mol Biol Evol. 30:395–408.
  • Hebert PDN, Cywinska A, Ball SL, de Waard JR. 2003. Biological identifications through DNA barcodes. Proc R Soc London B Biol Sci B. 270:313–322.
  • Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proc Natl Acad Sci USA. 2004a; 101:14812–14817.
  • Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM. Identification of birds through DNA barcodes. PLoS Biol. 2004b; 2:1657–1663.
  • Heok H. 2003. A review of the Ompok hypophthalmus group of silurid catfishes with the description of a new species from South-East Asia. J Fish Biol. 62:1296–1311.
  • Hogg ID, Hebert PDN. 2004. Biological identification of springtails (Collembola: Hexapoda) from the Canadian Arctic, using mitochondrial DNA barcodes. Can J Zoo. 82:749–754.
  • Hubert N, Hanner R, Holm E, Mandrak NE, Taylor E. 2008. Identifying Canadian freshwater fishes through DNA barcodes. PLoS Biol. 3:e2490 doi: 10.1371/journal.pone.0002490.
  • Kartavtsev YP, Park TJ, Vinnikov KA, Ivankov VN, Sharina SN, Lee JS. Cytochrome b (Cyt-b) gene sequences analysis in six flatfish species (Pisces, Pleuronectidae) with phylogenetic and taxonomic insights. Mar Biol. 2007a; 152:757–773.
  • Kartavtsev YP, Jung SO, Lee YM, Byeon HK, Lee JS. Complete mitochondrial genome in the bullhead torrent catfish, Liobagrus obesus (Siluriformes, Amblycipididae): Genome description and phylogenetic considerations inferred from the Cyt b and 16S rRNA genes. Gene. 2007b; 396:13–27.
  • Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, Wilson AC. 1989. Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc Natl Acad Sci USA. 86:6196–6200.
  • Lakra WS, Sarkar UK. 2006. Freshwater fish diversity of central India. Lucknow: National Bureau of Fish Genetic Resources1–200.
  • Lakra SW, Goswami M, Gopalakrishnan A. 2008. Molecular identification and phylogenetic relationships of seven Indian Sciaenids (Pisces: Perciformes, Sciaenidae) based on 16S rRNA and cytochrome c oxidase subunit I mitochondrial genes. Mol Biol Rep. 36:831–839.
  • Lakra WS, Verma MS, Goswami M, Lal KK, Mohindra V, Punia P, Gopalakrishnan A, Singh KV, Ward RD, Hebert P. 2010. DNA barcoding Indian marine fishes. Mol Biol Rep. 11 1: 60–71.
  • McVeigh HP, Barlett SE, Davidson WS. 1991. Polymerase chain reaction/direct sequence analysis of the cytochrome b gene in Salmo salar. Aquaculture. 95:225–233.
  • Moritz C, Cicero C. 2004. DNA barcoding: Promise and pitfalls. PLoS Biol. 2:e354.
  • Munasinghe H, Burridge C, Austin C. 2004. The systematics of freshwater crayfish of the genus Cherax Erichson (Decapoda: Parastacidae) in eastern Australia re-examined using nucleotide sequences from 12S rRNA and 16S rRNA genes. Invertebrate systematics. Aust J Sci. 18:215–225.
  • Nei M, Kumar S. 2000. Molecular evolution and phylogenetics. New York: Oxford University Press.
  • Orti G, Bell MA, Retmchen TE, Meyer A. 1994. Global survey of mitochondrial DNA sequences in the three spine stickleback: Evidence for recent migrations. Evolution. 48:608–622.
  • Rozas J, Rozas R. 1995. DnaSP, DNA sequence polymorphism: An interactive program for estimating population genetics parameters from DNA sequence data. Comput Appl Biosci. 11:621–625.
  • Ruzzante DE, Taggart CT, Cook C, Goddard S. 1996. Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua) off New found land: Microsatellite DNA variation and antifreeze level. Can J Fish Aquat Sci. 53:634–645.
  • Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 4:406–425.
  • Santos S, Schneider H, Sampaio I. 2003. Genetic differentiation of Macrodon ancylodon (Sciaenidae, Perciformes) populations in Atlantic coastal waters of South America as revealed by mtDNA analysis. Genet Mol Biol. 26 2: 151–161.
  • Steinke D, Vences M, Salzburger W, Meyer A. 2005. TaxI: A software tool for DNA barcoding using distance methods. Philos Trans R Soc Lond B Biol Sci. 360:1847–1857.
  • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596–1599.
  • Teugels GG. 2003. State of the art of recent siluriform systematics. In: Arratia G, Kapoor BG, Chardon M, Diogo R. editors. Catfishes. Enfield, NH: Science Publishers317–352.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgens DG. 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876–4882.
  • Vinson C, Grazielle G, Schneider H, Sampaio I. 2004. Sciaenidae fish of the Caete river estuary, Northern Brazil: Mitochondrial DNA suggests explosive radiation for the Western Atlantic assemblage. Genet Mol Biol. 27 2: 174–180.
  • Voelker G, Edwards SV. 1998. Can weighting improve bushy trees? Models of cytochrome b evolution and the molecular systematics of pipits and wagtails (Aves: Motacillidae). Syst Biol. 47 4: 589–603.
  • Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PDN. 2005. DNA barcoding Australia's fish species. Philos Trans R Soc Lond B Biol Sci. 360:1847–1857.
  • Yang Z. 1996. Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol Evol. 11:367–372.

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