Genetic diversity analysis of Arius manillensis (Siluriformes: Ariidae) using the mitochondrial control region

References

• Aldaba V. 1931. The kanduli fishery of Laguna de Bay. Phil J Sci. 45:29–39.
   Google Scholar
• Alves MJ, Coelho H, Collares-Pereira MJ, Coelho M. 2001. Mitochondrial DNA variation in the highly endangered cyprinid fish Anaecypris hispanica: Importance for conservation. Heredity. 87:463–473.
   PubMed Web of Science ®Google Scholar
• Baluyut EA. 1983. Fish introductions in lakes and reservoirs in the ASEAN region: A review. FAO Fish Tech Pap. 236:82.
   Google Scholar
• Bernatchez L, Danzmann RG. 1993. Congruence in control-region sequence and restriction-site variation in mitochondrial DNA of Brook Charr (Salvelinus fontinalis Mitchill). Mol Biol Evol. 10:1002–1014.
   Web of Science ®Google Scholar
• Brown WM, George M, Wilson AC. 1979. Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci. 76:1967–1971.
   PubMed Web of Science ®Google Scholar
• Cann RL, Brown WM, Wilson AC. 1984. Polymorphic sites and the mechanism of evolution in human mitochondrial DNA. Genetics. 106:479–499.
   PubMed Web of Science ®Google Scholar
• Castro JA, Picornell A, Ramon M. 1998. Mitochondrial DNA: A tool for populational genetics studies. Int Microbiol. 1:327–332.
   PubMedGoogle Scholar
• Chen XL, Chiang TY, Lin HD, Zheng KT, Shaos KT, Zhang Q, Hsu KC. 2007. Mitochondrial DNA phylogeography of Glyptothorax fokiensis and Glyptothorax hainanensis in Asia. J Fish Biol. 70:75–93.
   Web of Science ®Google Scholar
• Crandall KA, Posada D, Vasco D. 1999. Effective population size: Missing measures and missing concepts. Anim Conserv. 2:317–319.
   Web of Science ®Google Scholar
• Conlu PV. Guide to Philippine flora and fauna. Vol. IX. Manila: National Resources Management Center, Ministry of Natural Resources, and University of the Philippines. 1986.
   Google Scholar
• Davies J, Magsalay P, Rigor R, Mapalo A, Gonzales H. A directory of Philippine wetlands. Asian Wetlands Bureau Philippines Foundation, Inc./Haribon Foundation. 1990CebuPhilippines.
   Google Scholar
• Delmendo MN, Bustillo RN. Studies on fish population of Laguna de Bay. FAO Occas. Pap.69/12. IPFC/C68/Tech.30. 1968.
   Google Scholar
• Douglass M. 1992. The political economy of urban poverty and environmental management in Asia: Access, empowerment and community based alternatives. Environ Urban. 4:9–32.
   Google Scholar
• Dowling DK, Friberg U, Lindell J. 2008. Evolutionary implications of non-neutral mitochondrial genetic variation. Trends Ecol Evol. 23:546–554.
   PubMed Web of Science ®Google Scholar
• Excoffier L, Laval G, Schneider S. 2005. Arlequin ver 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online. 1:47–50.
   PubMed Web of Science ®Google Scholar
• Fauvelot C, Bernardi G, Planes S. 2003. Reductions in the mitochondrial DNA diversity of coral reef fish provide evidence of population bottlenecks resulting from holocene sea-level change. Evolution. 57:1571–1583.
   PubMed Web of Science ®Google Scholar
• Freyhof JF, Lieckfeldt D, Pitra C, Ludwig A. 2005. Molecules and morphology: Evidence for introgression of mitochondrial DNA in Dalmatian cyprinids. Mol Phylogenet Evol. 37:347–354.
   PubMed Web of Science ®Google Scholar
• Gaffney PM, Rupnow J, Domeier ML. 2007. Genetic similarity of disjunct populations of the giant sea bass Stereolepis gigas. J Fish Biol. 70:111–124.
   Web of Science ®Google Scholar
• Grant WS, Bowen BW. 1998. Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation. J Hered. 89:415–426.
   Web of Science ®Google Scholar
• Herre AW. 1926. A summary of the Philippine catfishes Order Nematognatha. Phil J Sci. 31:385–413.
   Google Scholar
• Jaraula CB, Siringan FP. 2005. Transformation of Laguna Lake from a marine arm of Manila Bay to a freshwater system. In: Cuvin-Aralar ML, Punongbayan RS, Santos-Borja A, Castillo LV, Manalili EV, Mendoza MM. editors. Proceedings of the first national congress on Philippine lakes (LakeCon2003). Los Baños, Laguna, Philippines: SEAMEO, SEARCA1–10 340p.
   Google Scholar
• Kailola PJ. 1999. Ariidae. In: Carpenter KE, Niem VH. editors. FAO species identification guides for fishery purposes: The living marine resources of the Western Central Pacific. Rome: FAO1827–1879.
   Google Scholar
• Kochzius M, Blohm M. 2005. Genetic population structure of the lionfish Pterois miles (Scorpaenidae, Pteroinae) in the Gulf of Aqaba and northern Red Sea. Gene. 347:295–301.
   PubMed Web of Science ®Google Scholar
• Kumar N, Lakra WS, Majumdar KC, Goswami M, Ravinder K. 2007. Genetic diversity in the Indian population of Penaeus monodon (Fabricius, 1798) as revealed by mtDNA sequence analysis. Aquacult Res. 38:862–869.
   Web of Science ®Google Scholar
• Lee WJ, Conroy J, Howell WH, Kocher TD. 1995. Structure and evolution of teleost mitochondrial control regions. J Mol Evol. 41:54–66.
   PubMed Web of Science ®Google Scholar
• Librado P, Rozas J. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics. 25:1451–1452.
   PubMed Web of Science ®Google Scholar
• Lin HD, Hsu KC, Shao KT, Chang YC, Wang JP, Lin CJ, Chiang TY. 2008. Population structure and phylogeography of Aphyocypris kikuchii (Oshima) based on mitochondrial DNA variation J Fish Biol. 72:2011–2025.
   Google Scholar
• Martínez P, González EG, Castilho R, Zardoya R. 2006. Genetic diversity and historical demography of Atlantic bigeye tuna (Thunnus obesus). Mol Phylogenet Evol. 39:404–416.
   PubMed Web of Science ®Google Scholar
• Mercene EC. 1978. Kanduli population survey of Laguna de Bay. Phil J Fish. 16:1–24.
   Google Scholar
• Mercene EC. 1987. A survey of Laguna de Bay open water fishery. Fish Res J Phil. 12:17–28.
   Google Scholar
• Posada D. 2008. jModelTest: Phylogenetic model averaging. Mol Biol Evol. 25:1253–1256.
   PubMed Web of Science ®Google Scholar
• Punongbayan RS. 2005. Origin of Philippine Lakes. In: Cuvin-Aralar ML, Punongbayan RS, Santos-Borja A, Castillo LV, Manalili EV, Mendoza MM. editors. Proceedings of the first national congress on Philippine lakes (LakeCon2003). Los Baños, Laguna: SEAMEO, SEARCA1–10 340 p.
   Google Scholar
• Ray N, Currat M, Excoffier L. 2003. Intra-deme molecular diversity in spatially expanding populations. Mol Biol Evol. 20:76–86.
   PubMed Web of Science ®Google Scholar
• Saito T, Washio S, Dairiki K, Shimojo M, Itoi S, Sugita H. 2008. High gene flow in Girella punctata (Perciformes, Kyphosidae) among the Japanese Islands inferred from partial sequence of the control region in mitochondrial DNA. J Fish Biol. 73:1937–1945.
   Web of Science ®Google Scholar
• Santos-Borja A, Nepomuceno DN. 2006. Laguna de Bay: Institutional development and change for lake basin management. Lakes Reservoirs: Res Manage. 11:257–269.
   Google Scholar
• Steinke D, Zemlak T, Hebert P. 2009. Barcoding Nemo: DNA-based identifications for the ornamental fish trade. PloS ONE. 4:e6300.
   PubMed Web of Science ®Google Scholar
• Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular evolutionary analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731–2739.
   PubMed Web of Science ®Google Scholar
• Thai BT, Pham TA, Austin CM. 2006. Genetic diversity of common carp in Vietnam using direct sequencing and SSCP analysis of the mitochondrial DNA control region. Aquaculture. 258:228–240.
   Web of Science ®Google Scholar
• Untergasser A, Nijveen H, Rao X, Bisseling T, Geurts R, Leunissen JAM. 2007. Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res. 35:W71–W74.
   PubMed Web of Science ®Google Scholar
• Vallejo AN. 1985. Fisheries of Laguna de Bay. Nat Appl Sci Bull. 37:285–346.
   Google Scholar
• Villadolid DV. 1932. Some aspects of the question of conservation of fishery resources of Laguna de Bay and Lake Taal. Nat Appl Sci Bull. 2:293–295.
   Google Scholar
• Villadolid DV. 1934. Kanduli fisheries of Laguna de Bay, Philippine Islands. Phil J Sci. 54:545–552.
   Google Scholar
• Wirgin BI, Waldman J, Stabile J, Lubinski B, King T. 2002. Comparison of mitochondrial DNA control region sequence and structure and gene flow rates in Atlantic sturgeon Acipenser oxyrinchus. J Appl Ichthyol. 18:313–319.
   Web of Science ®Google Scholar
• Zardoya R, Meyer A. 1996. Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Mol Biol Evol. 13:933–942.
   PubMed Web of Science ®Google Scholar