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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 23, 2012 - Issue 3
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Full Length Research Papers

Morphological taxonomy and molecular divergence of four balitorid species (subfamily: Nemachelinae) from Central Himalaya, India

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Pages 239-249 | Received 02 Dec 2011, Accepted 06 Mar 2012, Published online: 01 Jun 2012

References

  • Agnese JF, Teugels GG, Galbusera P, Guyomard R, Valckaerts F. 1997. Morphometric and genetic characterization of sympatric populations of Clarias gariepinus and C. anguillaris from Senegal. J Fish Biol. 50:1143–1157.
  • Atkore VM, Sivakumar K, Johnsingh AJT. 2011. Patterns of diversity and conservation status of freshwater fishes in the tributaries of River Ramganga in the Shiwaliks of the Western Himalaya. Curr Sci. 100 5: 731–735.
  • Avise JC. 1994. Molecular markers, natural history and evolution. New York: Chapman and Hall, Inc.
  • Banarescu P, Mirza MR. 1972. Noemacheilus alepidotus nalbanti nova subsp., a new loach from Rawlakot, Azad Kashmir. Biologia. 18 2: 121–123.
  • Bartlett SE, Davidson WS. 1991. Identification of Thunnus tuna species by the polymerase chain reaction and direct sequence analysis of mitochondrial Cytochrome b genes. Can J Fish Aqua Sci. 48:309–317.
  • Beckenbach AT. 1991. Rapid mtDNA sequence analysis of fish populations using polymerase chain reaction (PCR). Can J Fish Aqua Sci. 48 1: 95–98.
  • Beuttell K, Losos JB. 1999. Ecological morphology of Caribbean anoles. Herpet Mono. 13:1–28.
  • Borowsky R, Mertz L. 2001. Genetic differentiation among the cave fish, Schistura Oedipus (Cypriniformes: Balitoridae). Environ Bio Fish. 62:225–231.
  • Briolay J, Galtier N, Brito RM, Bouvet Y. 1998. Molecular phylogeny of Cyprinidae inferred from Cytochrome b DNA sequences. Mol Phylogenet Evol. 9:100–108.
  • Burland TG. 2000. DNASTAR's lasergene sequence analysis software. Methods Mol Biol. 132:71–91.
  • Caldara F, Bargelloni L, Ostellari L, Penzo E, Colombo L, Patarnello T. 1996. Molecular phylogeny of grey mullets based on mitochondrial DNA sequence analysis: Evidence of differential rate of evolution at the intra family level. Mol Phylogenet Evol. 6:416–424.
  • CAMPReport of the workshop on Conservation Assessment and Management Plan (CAMP) for freshwater fishes of India19981–156 Zoo Outreach Org and NBFGR, Lucknow, India, 22–26 Sept 1997.
  • Carr SM, Marshall HD. 1991. Detection of intraspecific DNA sequence variation in the mitochondrial Cytochrome b gene of Atlantic cod (Gadus morhua) by the polymerase chain reaction. Can J Fish Aqua Sci. 48:48–52.
  • Cataudella SM, Civitelli V, Capanna E. 1974. Chromosome complement of the Mediterranean mullets (Pisces, Perciformes). Caryologia. 27:93–105.
  • Champasri TR, Rapley M, Duangjinda Suksri A. 2007. A morphological identification in fish of the genus Puntius Hamilton 1822 (Cypriniformes: Cyprinidae) of some wetlands in Northeast Thailand. Pak J Biol Sci. 10:4383–4390.
  • Chapman LJ, Chapman CA, Brazeau DA, McLaughlin B, Jordan M. 1999. Papyrus swamps, hypoxia, and faunal diversification: Variation among populations of Barbus neumayeri. J Fish Biol. 54:310–327.
  • Chen QQ, Lu DR, Ma L. 2005. Morphological differentiation between close populations discernible by multivariate analysis: A case study of genus Coilia (Teleostei: Clupeiforms). Aqua Living Resour. 18:187–192.
  • Cormack RM. 1971. A review of classification. J Roy Stat Soc Ser A. 134:321–367.
  • Durand JD, Tsigenopoulos CS, Unlu E, Berrebi P. 2002. Phylogeny and Biogeography of the family Cyprinidae in the Middle East inferred from Cytochrome b DNA-evolutionary significance of this region. Mol Phylogenet Evol. 22:91–100.
  • Elliott NG, Haskard K, Koslow JA. 1995. Morphometric analysis of orange roughy (Hoplostethus atlanticus) off the continental slope of southern. Aus J Fish Biol. 46:202–220.
  • Elvira B, Almodovar A. 2000. Further observations on the morphological characters of Acipenser sturio L., 1758 from the Iberian Peninsula: A comparison with North and Adriatic Sea populations. Bol Inst Esp Oceanogr. 16:89–97.
  • Eschmeyer WN2011 Catalog of fishes electronic version. Available at: http://research.calacademy.org/research/ichthyology/catalog/fishcatmain.asp (accessed 5 July 2011).
  • Feral JP. 2002. How useful are the genetic markers in attempts to understand and manage marine biodiversity. Exp Mar Bio Ecol. 268:121–145.
  • Froese R, Pauly D. 2011. Fishbase. Available at: http://www.fishbase.org (accessed 1 July 2011).
  • Gunther A. 1868. Catalogue of the Physostomi, containing the families Heteropygii, Cyprinidae, Gonorhynchidae, Hyodontidae, Osteoglossidae, Clupeidae, … [thru]… Halosauridae, in the collection of the British Museum. Catalogue Fishes Br Mus. 7:1–512.
  • Hamilton F. 1822. An account of the fishes found in the river Ganges and its branches, Edinburgh: Archibald, Constable & Co.; London: Hurst, Robinson & Co., vol. I–VII, pp 1–405, pls. 1–39.
  • He D, Chen Y. 2006. Biogeography and molecular phylogeny of genus Schizothorax (Teleostei: Cyprinidae) in China inferred from cytochrome b sequences. J Biogeol. 33:1448–1460.
  • Hora SL. 1932. Classification, bionomics and evolution of Homalopterid fishes. Mem Indian Mus. 12:263–330.
  • Hora SL. 1937. Distribution of Himalayan fishes and its bearing on certain palaeogeographical problems. Rec Ind Mus. 39 3: 25–259.
  • Hora SL, Mukerji DD. 1936. Notes on the fishes in the Indian Museum. XXVII – on two collections of fish from Maungmagan, Tavoy District, Lower Burma. Rec Indian Mus. 38:15–39.
  • Iguchi K, Yamamoto G, Matsubara N, Nishida M. 2003. Morphological and genetic analysis of fish of a Carassius complex (Cyprinidae) in Lake Kasumigaura with reference to the taxonomid status of two all-female triploid morphs. Biol J Linn Soc. 79:351–357.
  • Irwin DM, Kocher TD, Wilson AC. 1991. Evolution of cytochrome b gene of mammals. J Mol Biol Evol. 32:128–144.
  • IUCN. 2011. IUCN red list of threatened species, Version 2011.1. Available at http://www.iucnredlist.org (accessed 3 July 2011).
  • Janko K, Vasi'ev VP, Ráb P, Rábová M, Šlechtová V, Vasil'eva ED. 2005. Genetic and morphological analyses of 50-chromosome spined loaches (Cobitis, Cobitidae, Pisces) from the Black Sea basin that are morphologically similar to C. taenia, with the description of a new species. Folia Zoolog. 54:405–420.
  • Jayaram KC. 2010. The freshwater fishes of the Indian region. Delhi: Narendra Publishing House551.
  • Jayasankar P, Thomas PC, Paulton MP, Mathew J. 2004. Morphometric and Genetic analyzes of Indian Mackerel (Rastrelliger kanagurta) from Peninsular India. Asian Fish Sci. 17:201–215.
  • Juan C, Guzik MT, Jaume D, Cooper SJB. 2010. Evolution in caves: Darwin's “wrecks of ancient life” in the molecular era. Mol Ecol. 19:3865–3880.
  • Khan MA. 2000. An account of fishes of Uttar Pradesh plains. Rec Zool Surv India. 98:101–121.
  • Klingenberg CP. 1996. A combined morphometric and phylogenetic analysis of an ecomorphological trend: Pelagization in Antarctic fishes (Perciformes: Nototheniidae). Biol J Linn Soc. 59:143–177.
  • Kocher TD, Stepien CA. 1997. Molecular systematics of fishes. San Diego, CA: Academic Press.
  • Kottelat M. 1988. Two species of cavefishes from northern Thailand in the genera Nemacheilus and Homaloptera (Osteichthyes: Homalopteridae). Rec Aus Mus. 40 4: 225–231.
  • Kottelat M. 1988. Indian and Indochinese species of Balitora (Osteichthyes: Cypriniformes) with descriptions of two new species and comments on the family-group names Balitoridae and Homalopteridae. Rev Suisse Zool. 95:487–504.
  • Kottelat M. Indochinese Nemacheilines. A revision of Nemacheiline loaches (Pisces: Cypriniformes) of Thailand, Burma, Laos, Cambodia and southern Viet Nam. Verlag Dr Friedrich Pfeil München. 1990262.
  • Kottelat M, Daniel HR, Graham SP. 2007. Schistura papulifera, a new species of cave loach from Meghalaya, India (Teleostei: Balitoridae). Zootaxa. 1393:35–44.
  • Lakra WS, Goswami M, Mohindra V, Lal KK, Punia P. 2007. Molecular identification of five Indian sciaenids (Pisces: Perciformes, sciaenidae) using RAPD markers. Hydrobiologia. 583:359–363.
  • Lakra WS, Verma MS, Goswami M, Lal KK, Mohindra V, Punia P, Gopalakrishnan A, Singh KV, Ward RD, Hebert P. 2010. DNA barcoding Indian marine fishes. Mol Biol Rep. 11 1: 60–71.
  • Magoulas A, Sophronides K, Patarnello T, Hatzilaris E, Zouros E. 1995. Mitochondrial DNA variation in an experimental stock of gilthead sea bream (Sparus aurata). Mol Mar Biol Biotech. 4:110–116.
  • McClelland J. 1838. Observations on six new species of Cyprinidae, with an outline of a new classification of the family. J Asiat Soc Bengal. 7:941–948.
  • McVeigh HP, Davidson WS. 1991. A salmonid phylogeny inferred from mitochondrial Cytochrome b gene sequences. J Fish Biol. 39:277–282.
  • Menezes MR, Martins M, Naik S. 1992. Interspecific genetic divergence in grey mullets from the Goa region. Aquaculture. 105:117–129.
  • Menon AGK. 1949. Notes on Fishes; XLIV – fish from the Koshi Himalayas. Nepal Rec Ind Mus. 47:231–237.
  • Menon AGK. 1974. A check-list of Fishes of the Himalayan and Indo-Gangetic plains. Special Publication, Inland Fish.. Soc. India, Barrackpore. 1:1–136.
  • Menon AGK. The fauna of India and the adjacent countries. Pisces. IV Teleostei – Cobitoidea. Part 1. Homalopteridae. Zoolog Surv India. 1987259.
  • Mihara M, Sakai T, Nakao K, Martins L, Hosoya K, Miyazaki J. 2005. Phylogeography of loaches of the genus Lefua (Balitoridae, Cypriniformes) inferred from mitochondrial DNA sequences. Zoo Sci. 22:157–168.
  • Mohindra V, Anshumala Punia P, Narain L, Kapoor D, Lal KK. 2005. Microsatellite loci to determine population structure of Labeo dero (Hamilton Buchanan). Aqua Liv Resour. 18:83–85.
  • Pant MC. 1970. Fish fauna of the Kumaon Hills. Rec. Zool Surv India. 64 1–4: 85–96.
  • Papasotiropoulos V, Klossa-Kilia E, Kilias G, Alahiotis S. 2002. Genetic divergence and phylogenetic relationships in grey mullets (Teleostei: Mugilidae) based on PCR-RFLP analysis of mtDNA segments. Biolo Genet. 40:71–86.
  • Park JY, Lee HJ, Kim WJ, Lee JH, Min KS. 2000. Mitochondrial Cytochrome b sequence variation in Korean salmonids. J Fish Biol. 56:1145–1154.
  • Posada D, Crandall KA. 1998. MODELTEST: Testing the model of DNA substitution. Bioinformatics. 14:817–818.
  • Poulet N, Berrebi P, Crivelli AJ, Lek S, Argillier C. 2004. Genetic and morphometric variations in the pikeperch (Sander lucioperca L.) of the fragmented delta. Arch Hydrobiol. 159:531–554.
  • Prokofiev AM. 2009. Problems of the classification and phylogeny of Nemacheiline loaches of the group lacking the preethmoid I (Cypriniformes: Balitoridae: Nemacheilinae). J Ichthyol. 49 10: 874–898.
  • Romero A, Green SM. 2005. The end of regressive evolution: Examining and interpreting the evidence from cave fishes. J Fish Biol. 67:3–32.
  • Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning a laboratory manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
  • Sarkar UK, Pathak AK, Sinha RK, Sivakumar K, Pandian AK, Pandey A, Dubey VK, Lakra WS. 2011. Freshwater fish biodiversity of River Ganga (India): Pattern, threats and conservation. Rev Fish Biol Fisheries. 22 1: 251–272.
  • Sharma RC. 2004. Protection of an endangered fish Tor tor and Tor putitora population impacted by transportation network in the area of Tehri Dam Project, Garhwal Himalaya, India. In: Irwin CL, Garrett P, McDermott KP. editors. Proceedings of the 2003 International Conference on Ecology and Transportation. Raleigh: Center for Transportation and the Environment, North Carolina State University83–90.
  • Singh S. 1990. The lotic water fisheries of Kumaun HimalayaHimalaya environment resources and development. Almora: Shree Almora Book Depot276–284.
  • Shedko SV, Miroshnichenko IL, Nemkova GA. 2008. On the systematics and phylogeography of eight – Barbel loaches of the genus Lefua (Cobitoidea: Nemacheilidae): mtDNA typing of L. pleskei. Russian J Genet. 44 7: 817–825.
  • Sreekantha Gururaja KV, Remadevi K, Indra TJ, Ramchandra TV. 2006. Two new fish species of genus Schistura McClelland (Cypriniformes: Balitoridae) from Western ghats, India. Zoos' Print J. 21 4: 2211–2216.
  • StatSoft. 1995. Statistica for windows (computer program, a manual). Tulsa, OK: StatSoft., Inc.
  • Talwar PK, Jhingran AG. 1991. Inland fishes of India and adjacent countries. New Delhi, Bombay, Calcutta: Oxford & IBH Publishing Co.
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731–2739.
  • Tang Q, Liu H, Mayden R, Xiong B. 2006. Comparision of evolutionary rates in the mitochondrial DNA cytochrome b gene and control region and their implications for phylogeny of the cobitidae (Teleostei: Cypriniformes). Mol Phylogenet Evol. 39:347–357.
  • Teletchea F. 2009. Molecular identification methods of fish species: Reassessment and possible applications. Rev Fish Biol Fish. 19 3: 55–85.
  • Thangaraj M, Lipton AP. 2010. Genetic identity of three Indian populations of three spotted seahorse, Hippocampus trimaculatus. Adv Biolo Res. 4 1: 37–41.
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876–4882.
  • Tsigenopoulos CS, Kotlik P, Berrebi P. 2002. Biogeography and pattern of gene flow among Barbus species (Teleostei: Cyprinidae) inhabitating the Italian Peninsula and neighbouring Adriatic drainages as revelead by allozyme and mitochondrial sequence data. Biol J Linn Soc. 75:83–99.
  • Van Valen L. 1978. The statistics of variation. Evol Theory. 4:35–43.
  • Vishwanath W, Nebeshwar K. 2004. Schistura reticulata, a new species of balitorid loach from Manipur, India with redescription of S.chindwinica. Ichthyol Explore Freshwaters. 15 4: 323–330.
  • Vishwanath W, Nebeshwar K. 2005. A new nemacheiline fish of the genus Schistura McClelland (Cypriniformes: Balitoridae) from Manipur, India. J Bombay Nat Hiso Soc. 102 1: 79–82.
  • Vishwanath W, Shanta KM. 2006. A new nemacheiline fish of the genus Schistura Mcclelland (Cypriniformes: Balitoridae) from Manipur, India. J Bombay Nat Hist Soc. 102 2: 210–213.
  • Wilson PJ, Woods CM, Maina JN, White BN. 2000. Genetic structure of Lake Magadi tilapia populations. J Fish Biol. 56:590–603.
  • Xia X, Xie Z. 2001. DAMBE: Data analysis in molecular biology and evolution. J Heredity. 92:371–373.
  • Yoshizaki G, Yamaguchi K, Oota T, Strüssmann CA, Takashima F. 1997. Cloning and characterization of pejerrey mitochondrial DNA and its application for RFLP analysis. J Fish Biol. 51:193–203.
  • Zhu D, Jamieson BGM, Hugall A, Moritz C. 1994. Sequence evolution and phylogenetic signal in control-region and Cyt b sequences of rainbow fishes (Melanotaeniidae). Mol Biol Evol. 11:672–683.

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