Publication Cover
Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 24, 2013 - Issue 6
393
Views
15
CrossRef citations to date
0
Altmetric
Full Length Research Paper

COI barcodes and phylogeny of doves (Columbidae family)

&
Pages 689-696 | Received 26 Jul 2012, Accepted 28 Sep 2012, Published online: 02 Apr 2013

References

  • Arif IA, Khan HA. 2009. Molecular markers for biodiversity analysis of wildlife animals: A brief review. Anim Biodivers Conserv. 32:9–17.
  • Arif IA, Khan HA, Shobrak M, Williams J. Cytochrome c oxidase subunit I barcoding of the green bee-eater (Merops orientalis). Genet Mol Res. 2011a; 10:3992–3998.
  • Arif IA, Khan HA, Bahkali AH, AL Homaidan Al, Al Farhan AH, Al Sadoon M, Shobrak M. DNA marker technology for wildlife conservation. Saudi J Biol Sci. 2011b; 18:219–225.
  • Arif IA, Khan HA, Williams JB, Shobrak M, Arif W. 2012. DNA barcodes of Asian Houbara Bustard (Chlamydotis undulate macqueenii). Int J Mol Sci. 13:2425–2438.
  • Chaves AV, Clozato CL, Lacerda DR, Sari EH, Santos FR. 2008. Molecular taxonomy of Brazilian tyrant-flycatchers (Passeriformes: Tyrannidae). Mol Ecol Resour. 8:1169–1177.
  • Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:783–791.
  • Fleischer RC, Kirchman JJ, Dumbacher JP, Bevier L, Dove C, Rotzel NC, Edwards SV, Lammertink M, Miglia KJ, Moore WS. 2006. Mid-Pleistocene divergence of Cuban and North American ivory-billed woodpeckers. Biol Lett. 2:466–469.
  • Hebert PD, Cywinska A, Ball SL, deWaard JR. 2003. Biological identifications through DNA barcodes. Proc Biol Sci. 270:313–321.
  • Hebert PD, Stoeckle MY, Zemlak TS, Francis CM. 2004. Identification of Birds through DNA Barcodes. PLoS Biol. 2:e312.
  • Johnson KP, Clayton DH. 2000. A molecular phylogeny of the dove genus Zenaida: Mitochondrial and nuclear DNA sequences. Condor. 102:864–870.
  • Johnson KP, Clayton DH, Dumbacher JP, Fleischer RC. 2010. The flight of the Passenger Pigeon: Phylogenetics and biogeographic history of an extinct species. Mol Phylogenet Evol. 57:455–458.
  • Jonsson KA, Irestedt M, Bowie RC, Christidis L, Fjeldsa J. 2011. Systematics and biogeography of Indo-Pacific ground-doves. Mol Phylogenet Evol. 59:538–543.
  • Kan XZ, Li XF, Zhang LQ, Chen L, Qian CJ, Zhang XW, Wang L. 2010. Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae). Genet Mol Res.. 9:1234–1249.
  • Kerr KC, Stoeckle MY, Dove CJ, Weigt LA, Francis CM, Hebert PD. 2007. Comprehensive DNA barcode coverage of North American birds. Mol Ecol Notes.. 7:535–543.
  • Kerr KC, Birks SM, Kalyakin MV, Red'kin YA, Koblik EA, Hebert PD. 2009. Filling the gap—COI barcode resolution in eastern Palearctic birds. Front Zool. 6:29.
  • Khan HA, Arif IA, Bahkali AH, Al Farhan AH, Al Homaidan AA. 2008. Bayesian, maximum parsimony and UPGMA models for inferring the phylogenies of antelopes using mitochondrial markers. Evol Bioinform. 4:263–270.
  • Khan HA, Arif IA, Shobrak M. 2010. DNA barcodes of Arabian partridge and Philby's rock partridge: Implications for phylogeny and species identification. Evol Bioinform. 6:151–158.
  • Kirchman JJ, Franklin JD. 2007. Comparative phylogeography and genetic structure of Vanuatu birds: Control region variation in a rail, a dove, and a passerine. Mol Phylogenet Evol. 43:14–23.
  • Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X version 2.0. Bioinformatics. 23:2947–2948.
  • Nabholz B, Künstner A, Wang R, Jarvis ED, Ellegren H. 2011. Dynamic evolution of base composition: Causes and consequences in avian phylogenomics. Mol Biol Evol. 28:2197–2210.
  • Pereira SL, Johnson KP, Clayton DH, Baker AJ. 2007. Mitochondrial and nuclear DNA sequences support a Cretaceous origin of Columbiformes and a dispersal-driven radiation in the Paleocene. Syst Biol. 56:656–672.
  • Rach J, Desalle R, Sarkar IN, Schierwater B, Hadrys H, Character-based DNA. 2008. barcoding allows discrimination of genera, species and populations in Odonata. Proc Biol Sci. 275:237–247.
  • Ratnasingham S, Hebert PDN. 2007. BOLD: The Barcode of Life Data System (www.barcodinglife.org). Mol Ecol Notes. 7:355–364.
  • Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 4:406–425.
  • Shapiro B, Sibthorpe D, Rambaut A, Austin J, Wragg GM, Bininda-Emonds OR, Lee PL, Cooper A. 2002. Flight of the dodo. Science. 295:1683.
  • Tamura K, Nei M, Kumar S. 2004. Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA. 101:11030–11035.
  • Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 24:1596–1599.
  • Tavares ES, Baker AJ. 2008. Single mitochondrial gene barcodes reliably identify sister-species in diverse clades of birds. BMC Evol Biol. 8:81.
  • Vilaça ST, Lacerda DR, Sari HER, Santos FR. 2006. DNA-based identification applied to Thamnophilidae (Passeriformes) species: The first barcodes of Neotropical birds. Revista Brasileira de Ornitologia. 14:7–13.
  • Yang R, Wu X, Yan P, Li X. 2010. Using DNA barcodes to identify a bird involved in a birdstrike at a Chinese airport. Mol Biol Rep.. 37:3517–3523.
  • Yoo HS, Eah JY, Kim JS, Kim YJ, Min MS, Paek WK, Lee H, Kim CB. 2006. DNA barcoding Korean birds. Mol Cells. 22:323–327.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.