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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 24, 2013 - Issue 6
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Full Length Research Paper

Genetic structure of a Japanese brown frog (Rana japonica) population implies severe restriction of gene flow caused by recent urbanization in a satoyama landscape

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Pages 697-704 | Received 27 Nov 2012, Accepted 04 Feb 2013, Published online: 02 Apr 2013

References

  • Andersen LW, Fog K, Damgaard C. 2004. Habitat fragmentation causes bottlenecks and inbreeding in the European tree frog (Hyla arborea). Proc R Soc B-Biol Sci. 271:1293–1302.
  • Anderson CD, Epperson BK, Fortin MJ, Holderegger R, James PMA, Rosenberg MS, Scribner KT, Spear S. 2010. Considering spatial and temporal scale in landscape-genetic studies of gene flow. Mol Ecol. 19:3565–3575.
  • Azuma A, Takeuchi K. 1999. Relationships between population density of frogs and environmental conditions in Yatsu-habitat.. J Jpn Inst Landscape Architec. 62:573–576 (in Japanese with English summary).
  • Beebee TJC. 2005. Conservation genetics of amphibians. Heredity. 95:423–427.
  • Beebee TJC, Griffiths RA. 2005. The amphibian decline crisis: A watershed for conservation biology?. Biol Conserv. 125:271–285.
  • Clement M, Posada D, Crandall KA. 2000. TCS: A computer program to estimate gene genealogies. Mol Ecol. 9:1657–1659.
  • Cushman SA. 2006. Effects of habitat loss and fragmentation on amphibians: A review and prospectus. Biol Conserv. 128:231–240.
  • DeSalle R, Amato. 2004. The expansion of conservation genetics. Nat Rev Gen. 5:702–712.
  • Dixo M, Metzger JP, Morgante JS, Zamudio KR. 2009. Habitat fragmentation reduces genetic diversity and connectivity among toad populations in the Brazilian Atlantic Coastal Forest. Biol Conserv. 142:1560–1569.
  • Dodd, CK Jr., Smith LL. 2003. Habitat destruction and alteration. Historical trends and future prospects for amphibians. In: Amphibian Conservation, p. 94–112. Semlitsch, R.D., Ed., Washington, D.C.: Smithsonian Institution Press.
  • Dupanloup I, Schneider S, Excoffier L. 2002. A simulated annealing approach to define the genetic structure of populations. Mol Ecol. 11:2571–2581.
  • Excoffier L, Lischer HEL. 2010. Arlequin suite ver. 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10:564–567.
  • Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics. 131:479–491.
  • Frankham R, Ballou JD, Briscoe DA.. 2002. Introduction to conservation genetics. Cambridge: Cambridge University Press.
  • Gibbs JP, Shriver WG. 2005. Can road mortality limit populations of pool-breeding amphibians?. Wetl Ecol Manag. 13:281–289.
  • Gibbs JP, Whiteleather KK, Schueler FW. 2005. Changes in frog and toad populations over 30 years in New York State. Ecol Appl. 15:1148–1157.
  • Guzy JC, McCoy ED, Deyle AC, Gonzalez SM, Halstead N, Mushinsky HR. 2012. Urbanization interferes with the use of amphibians as indicators of ecological integrity of wetlands.. J. App Ecol,. 49:941–952.
  • Hamer AJ, McDonnell MJ. 2008. Amphibian ecology and conservation in the urbanising world: A review. Biol Conserv. 141:2432–2449.
  • Hara Y, Takeuchi K, Okubo S. 2005. Urbanization linked with past agricultural landuse patterns in the urban fringe of a deltaic Asian mega-city: A case study in Bangkok. Landscape Urban Plan. 73:16–28.
  • He JF, Liu JY, Zhuang DF, Zhang W, Liu ML. 2007. Assessing the effect of land use/land cover change on the change of urban heat island intensity. Theor Appl Climatol. 90:217–226.
  • IUCN, Conservation International, and NatureServe. 2006. Global Amphibian Assessment, www.globalamphibians.org. Accessed February 2008.
  • Kobori H, Primack RB. 2003. Participatory conservation approaches for satoyama, the traditional forest and agricultural landscape of Japan. Ambio. 32:307–311.
  • Lacy RC.. 1987. Loss of genetic diversity from managed populations: interacting effects of drift, mutation, immigration, selection, and population subdivision. Conserv Biol. 1 2: 143–158.
  • Lane SJ, Fujioka M. 1998. The impact of changes in irrigation practices on the distribution of foraging egrets and herons (Ardeidae) in the rice fields of central Jpn. Biol Conserv. 83:221–230.
  • Leal IR, Filgueiras BKC, Gomes JP, Iannuzzi L, Andersen AN. 2012. Effects of habitat fragmentation on ant richness and functional composition in Brazilian Atlantic forest. Biodivers Conserv. 21:1687–1701.
  • Liu J, Liu M, Zhuang D, Zhang Z, Deng X.. 2003. Study on spatial pattern of land-use change in China during 1995-2000. Science in China Series D: Earth Sciences. 46 (4): 373–384.
  • Manni F, Guérard E, Heyer E. 2004. Geographic patterns of (genetic, morphologic, linguistic) variation: How barriers can be detected by using Monmonier's algorithm. Hum Biol. 76:173–190.
  • Marunouchi J, Kusano T, Ueda H. 2002. Fluctuation in abundance and age structure of a breeding population of the Japanese brown frog, Rana japonica Günther (Amphibia, Anura). Zool Sci. 19:343–350.
  • Noël S, Ouellet M, Galois P, Lapointe FJ. 2007. Impact of urban fragmentation on the genetic structure of the eastern red-backed salamander. Conserv Gen. 8:599–606.
  • Osawa S, Katsuno T. 2001. Dispersal of the Brown Frogs, Rana japonica and R. ornativentris in the forest of the Tama Hills. Curr Herpetol. 20:1–10.
  • Peakall R, Lindenmayer D.. 2006. Genetic insights into population recovery following experimental perturbation in a fragmented landscape. Biol Conserv. 132:520–532.
  • Pellet J, Guisan A, Perrin N. 2004. A concentric analysis of the impact of urbanization on the threatened European tree frog in an agricultural landscape. Conserv Biol. 18:1599–1606.
  • Safner T, Miaud C, Gaggiotti O, Decout S, Rioux D, Zundel S, Manel S. 2011. Combining demography and genetic analysis to assess the population structure of an amphibian in a human-dominated landscape. Conserv Gen. 12:161–173.
  • Saizen I, Mizuno K, Kobayashi S. 2006. Effects of land-use master plans in the metropolitan fringe of Japan. Landscape Urban Plan. 78:411–421.
  • Stuart SN, Chanson JS, Cox NA, Young BE, Rodrigues ASL, Fischman DL, Waller RW. 2004. Status and trends of amphibian declines and extinctions worldwide. Science. 306:1783–1786.
  • Templeton AR, Crandall KA, Sing CFA. 1992. cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics. 132:619–633.
  • Tsuji M, Ushimaru A, Osawa T, Mitsuhashi H. 2011. Paddy-associated frog declines via urbanization: A test of the dispersal-dependent-decline hypothesis. Landscape Urban Plan. 103:318–325.
  • Yokohari M, Bolthouse J. 2011. Keep it alive, don't freeze it: A conceptual perspective on the conservation of continuously evolving satoyama landscapes. Landsc Ecol Eng. 7:207–216.
  • Yoon CG. 2009. Wise use of paddy rice fields to partially compensate for the loss of natural wetlands. Paddy Water Environ. 7:357–366.

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