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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 26, 2015 - Issue 1
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Research Articles

Mitochondrial 16S rRNA gene-based evolutionary divergence and molecular phylogeny of Barilius spp.

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Pages 41-47 | Received 25 Apr 2013, Accepted 07 Jun 2013, Published online: 24 Jul 2013

References

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. (1990). Basic local alignment search tool. J Mol Biol 215:403–10
  • Brown WM, George M Jr, Wilson AC. (1979). Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci USA 76:1967–71
  • Chakraborty A, Aranishi F, Iwatsuki W. (2006a). Genetic differences among three species of the genus Trichiurus (Perciformes: Trichiuridae) based on mitochondrial DNA analysis. Ichthyol Res 53:93–6
  • Chakraborty A, Venugopal MN, Hidaka K, Iwatsuki Y. (2006b). Genetic differentiation between two colour morphs of Gerreserythrourus (Perciformes: Gerreidae) from the Indo-Pacific region. Ichthyol Res 53:185–8
  • Day F. (1878). The Fishes of India; being a natural history of fishes known to inhabit the seas of freshwater of India, Myanmar and Ceylon. London: William Dawson and Sons Ltd. p 778
  • Dishma M, Vishwanath W. (2012). Barilius profundus, a new cyprinid fish (Teleostei: Cyprinidae) from the Koladyne basin, India. J Threat Taxa 4:2363–9
  • Dudu A, Georgescu SE, Popa O, Dinischiotu A, Costache M. (2011). Mitochondrial 16S and 12S rRNA sequence analysis in four salmonid species from Romania. Acta Zool Acad Scient Hung 57:233–46
  • Felsenstein J. (1993). PHYLIP (Phylogeny Inference Package) Version 3.50 Distributed by the author. Seattle, USA: Department of Genetics, University of Washington
  • Froese, Rainer and Daniel Pauly, eds. (2012). Species of Barilius in FishBase. October 2012 version
  • Hamilton F. (1822). An account of the fishes of river Ganges and its branches. London: George Ramsay and Co, vii+405 pp., 39 pls
  • Lakra WS, Goswami M, Gopalakrishnan A. (2009). Molecular identification and phylogenetic relationships of seven Indian Sciaenids (Pisces: Perciformes, Sciaenidae) based on 16S rRNA and cytochrome c oxidase subunit I mitochondrial genes. Mol Biol Rep 36:831–9
  • Librado P, Rozas J. (2009). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496–7
  • Naock K, Zardoya R, Meyer A. (1996). The complete mitochondrial DNA sequence of the Bichir (Polypterus ornatipinnis), a basal ray-finned fish: Ancient establishment of the consensus vertebrate gene order. Genetics 144:1165–80
  • Orrell TM, Carpenter KE. (2004). A phylogeny of the fish family Sparidae (porgies) inferred from mitochondrial sequence data. Mol Phylogenet Evol 32:425–34
  • Palumbi S, Martin A, Romano S, McMillan WO, Stice L, Grabowski G. (1991). The simple fool’s guide to PCR. Version2.0. Honolulu, HL: Department of Zoology and Kewalo Marine Laboratory, University of Hawaii
  • Russo CAM, Takezaki N, Nei M. (1996). Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny. Mol Biol Evol 13:525–36
  • Sah S, Barat A, Pande V, Sati J, Goel C. (2011). Population structure of Indian Hill Trout (Barilius bendelisis) inferred from variation in mitochondrial DNA sequences. Adv Biol Res 5:93–8
  • Singh M, Lakra WS, Bahuguna SN, Kartavtsev YPH. (2012). Cytochrome b gene sequence divergence of seven sisorid species of catfish genus Glyptothorax (Siluriformes, Sisoridae) from India. Mol Biol Rep 39:4275–82
  • Talwar PK, Jhingran AG. (1991). Inland fishes of India and adjacent countries. Vol. 1. New Delhi: Oxford & IBH Publishing Co. Pvt. Ltd., p 541
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Bio Evol 28:2731–9
  • Thompson JD, Higgins DG, Gibson TJ. (1994). CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nuc Acid Res 22:4673–80
  • Vinson C, Grazielle G, Schneider H, Sampaio I. (2004). Sciaenidae fish of the Caete river estuary, Northern Brazil: Mitochondrial DNA suggests explosive radiation for the Western Atlantic assemblage. Genet Mol Biol 27:174–80
  • Zardoya R, Meyer A. (1996). The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi), supports its phylogenetic position as a close relative of land vertebrates. Genetics 142:1249–63

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