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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 26, 2015 - Issue 2
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Short Communication

Genetic divergence in wild population of endangered yellowtail catfish Pangasius pangasius (Hamilton-Buchanan, 1822) revealed by mtDNA

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Pages 182-186 | Received 29 Jun 2013, Accepted 24 Oct 2013, Published online: 10 Jan 2014

References

  • Aoki G, Matsui M, Nishikawa K. (2013). Mitochondrial cytochrome b phylogeny and historical biogeography of the tohoku salamander, Hynobius Lichenatus (Amphibia, Caudata). Zool Sci 30:167–73
  • Bermingham E, McCafferty S, Martin A. (1997). Fish biogeography and molecular clocks: Perspectives from the Panamanian Isthmus. In: Kocher T, Stepien C, editors. Molecular systematics of fishes. New York: Academic Press. p 113–26
  • Brown WM, George M, Wilson AC. (1979). Rapid evolution of animal mitochondrial DNA. Proc Natl Acad Sci USA 76:1967–71
  • Clement M, Posada D, Crandall K. (2000). TCS: A computer program to estimate gene genealogies. Mol Ecol 9:1657–60
  • Dammannagoda ST, Hurwood DA, Mather PB. (2008). Evidence for fine geographical scale heterogeneity in gene frequencies in yellowfin tuna (Thunnus albacares) from the north Indian Ocean around Sri Lanka. Fisheries Res 90:147–57
  • Excoffier L, Smouse PE, Quattro JM. (1992). Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data. Genetics 86:991–1000
  • Excoffier L, Laval G, Schneider S. (2005). Arlequin ver. 3.11: An integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50
  • Fu Y, Li W. (1993). Statistical tests of neutrality of mutations. Genetics 133:693–709
  • Grant WS, Bowen BW. (1998). Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation. J Heredity 89:415–26
  • Gupta A, Lal KK, Punia P, Singh RK, Mohindra V, Sah RS, Kumar R, et al. (2013). Characterization of polymorphic microsatellite markers and genetic diversity in wild bronze featherback, Notopterus notopterus (Pallas, 1769). Mol Biol Rep 40:6625--31
  • Hamilton-Buchanan F. (1822). An account of the fishes found in the river Ganges and its branches. London: George Ramsay and Co. vii+405. p 39 pls
  • Hellberg ME. (2006). Genetic approaches to understanding marine metapopulation dynamics. In: Kritzer JP, Sale PF, editors. Marine metapopulations. Amsterdam: Academic Press. p 413–55
  • Kocher TD, Thomas WK, Meyer A, Edwards SV, Pääbo S, Villablanca FX, Wilson AC. (1989). Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proc Natl Acad Sci USA 86:6196–200
  • Librato P, Rozas J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–2
  • Lovette IJ, Bermingham E, Seutin G, Ricklets RE. (1998). Evolutionary differentiation in three endemic West Indian warblers. J Am Ornithologist’s Union 115:890–903
  • Luhariya RK, Lal KK, Singh RK, Mohindra V, Punia P, Chauhan UK, et al. (2012). Genetic divergence in wild population of Labeo rohita (Hamilton, 1822) from nine Indian rivers, analyzed through MtDNA cytochrome b region. Mol Biol Rep 39:3659–65
  • Mandal A, Mohindra V, Singh RK, Punia P, Singh AK, Lal KK. (2012). Mitochondrial DNA variation in natural populations of endangered Indian feather-back fish, Chitala chitala. Mol Biol Rep 39:1765–75
  • Mohindra V, Singh RK, Punia P, Gupta HS, Lal K K, Mishra A, Kumar R, et al. (2008). Isolation and characterization of polymorphic microsatellite loci in yellowtail catfish, Pangasius pangasius (Hamilton, 1822). Mol Ecol Resources 8:864–6
  • Mohindra V, Singh RK, Kumar R, Sah RS, Lal KK. (2013). Complete mitochondrial genome sequences of two endangered Indian catfish species, Clarias batrachus and Pangasius pangasius. Mitochondrial DNA. [Epub ahead of print]. doi: 10.3109/19401736.2013.840604
  • Rice W. (1989). Analyzing tables of statistical tests. Evolution 43:223–5
  • Rogers AR, Harpending H. (1992). Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9:552–69
  • Ruzzante DE, Taggart C, Cook D, Goddard S. (1996). Genetic differentiation between inshore and offshore Atlantic cod (Gadus morhua) of Newfoundland: microsatellite DNA variation and antifreeze level. Can J Fisheries Aquatic Sci 53:634–45
  • Sarkar UK, Deepak PK, Negi RS, Singh SP, Kapoor D. (2006). Captive breeding of endangered fish Pangasius pangasius (Hamilton-Buchanan) for species conservation and sustainable utilization. Biodiversity Conservation 15:3579–89
  • Tajima F. (1989). The effect of change in population size on DNA polymorphisms. Genetics 123:597–601
  • Talwar PK, Jhingran AG. (1991). Inland fishes of India and adjacent countries. Rotterdam: A.A. Balkema
  • Tamura K, Nei M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–26
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–9
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. (1997). The clustal_x Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–82
  • William J, Ballard O, Rand D M. (2005). The population biology of mitochondrial DNA and its phylogenetic implications. Annu Rev Ecol Evol Syst 36:621–42

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