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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 26, 2015 - Issue 4
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Research Article

Molecular characterization of Saudi local chicken strains using mitochondrial DNA markers

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Pages 520-531 | Received 11 Sep 2013, Accepted 03 Nov 2013, Published online: 10 Jan 2014

References

  • Akishinonomiya F, Miyake T, Sumi S, Takada M, Ohno S, Kondo N. (1994). One subspecies of the red junglefowl (Gallus gallus gallus) suffices as the matriarchic ancestor of all domestic breeds. Proc Natl Acad Sci USA 91:12505
  • Al-Yousef MY. (2007). A survey study on the distribution of Saudi baladi chickens and their characteristics. Intl J Poultry Sci 6:289–92
  • Anderson S, De Bruijn MHL, Coulson AR, Eperon IC, Sanger F, Young IG. (1982). Complete sequence of bovine mitochondrial DNA: Conserved features of the mammalian mitochondrial genome. J Mol Biol 156:683–717
  • Avise JC, Glenn CJ. (1998). A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Mol Biol Evol 15:1481–90
  • Blackburn TM, Cassey P, Gaston KJ. (2000). Variations on a theme: Sources of heterogeneity in the form of the interspecific relationship between abundance and distribution. J Anim Ecol 75:1426--39
  • Bloomer P, Crowe TM. (1998). Francolin phylogenetics: Molecular, morphobehavioral, and combined evidence. Mol Phylogenet Evol 9:236–54
  • Bradley DG, MacHugh PC, Loftus RT. (1996). Mitochondrial diversity and the origin of the African and European cattle. Proc Natl Acad Sci USA 93:5131–5
  • Brown WM, Prager EM, Wang A, Wilson AC. (1982). Mitochondrial DNA sequences of primates: Tempo and mode of evolution. J Mol Evol 18:225--39
  • Callejas C, Ochando MD. (2000). Recent radiation of Iberian Barbell fish (Teleostei, Cyprinidae) inferred from cytochrome b genes. J Hered 91:283–8
  • Desjardins P, Morais R. (1990). Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. J Mol Biol 212:599--634
  • Edwards SV, Arctander P. (1997). Congruence and phylogenetic reanalysis of perching bird cytochrome b sequences. Mol Phylogenet Evol 7:266–71
  • Esposti DM, De Vries S, Crimi M, Ghelli A, Patarnello T, Meyer A. (1993). Mitochondrial cytochrome b: Evolution and structure of the protein. Biochim Biophys Acta 1143:243–71
  • Granevitze Z, Hillel J, Feldman M, Six A, Eding H, Weigend S. (2009). Genetic structure of a wide-spectrum chicken gene pool. Anim Genet 40:686–93
  • Irwin DM, Kocher TD, Wilson AC. (1991). Evolution of cytochrome b gene inE mammals. J Mol Biol Evol 2:13–34
  • Johns GC, Avise JC. (1998). A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome b gene. Mol Biol Evol 15:1481–90
  • Kimura M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 6:111--20
  • Luikart G, Giellly L, Excoffier JD, Bouuvet VJ, Taberlet P. (2001). Multiple maternal origins and weak phylogeographic structure in domestic goats. Proc Natl Acad Sci USA 98:5927–32
  • Lydeard C, Roe KJ. (1997). The phylogenetic utility of themitochondrial cytochrome b gene for inferring relationships among Actinopterygian fishes. In: Kocher TD, Stepien CA, editors. Molecular systematic of fish. New York: Academic Press. p 285–303
  • Niu D, Fu Y, Luo J, Ruan H, Yu Y, Chen G, Zhang Y. (2002). The origin and genetic diversity of Chinese native chicken breeds. Biochem Genet 40:163–74
  • Meyer A. (1994). Shortcomings of the cytochrome b gene as a molecular marker. Trend Ecol Evol 9:278–80
  • Moore WS, DeFilippis VR. (1997). The window of taxonomic resolution for phylogenies based on mitochondrial cytochrome b. In: Mindell DP, editor. Avian molecular evolution and systematics. New York: Academic Press. p 83–119
  • Moritz C, Dowling TE, Brown WM. (1987). Evolution of animal mitochondrial DNA: Relevance for population biology and systematics. Ann Rev Ecol Syst 18:269–92
  • Saitou N, Nei M. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406--25
  • Shen XJ, Suzuki H, Tsudzuki M, Ito S, Nakamura T. (1999a). Complete cytochrome b gene information in Silky Fowl (Gallus gallus) (black feather line). Anim Sci J 70:98--100
  • Shen XJ, Suzuki H, Tsudzuki M, Nakamura T. (1999b). Primer design and sequence information for cytochrome b gene in the Chinese painted quail (Excalfactoria chinesis). Anim Sci J 70:240--2
  • Shen XJ, Ito, S, Mizutani, M, Yamamoto Y. (2002). Phylogenetic analysis in chicken breeds inferred from complete cytochrome b gene information. Biochem Genet 40:129–41
  • Sharma, D, Appa RK, Singh RV, Totey SM. (2001). Genetic diversity among chickens breeds estimated through randomly amplified polymorphic DNA. Anim Biotechnol 12:111–20
  • Tamura K, Nei M, Kumar S. (2004). Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci USA 101:11030–5
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–9
  • William SM, Victor RD. (1997). The window of taxanomic resolution for phylogenies based on mitochondrial cytochrome b. In: Mindell DP, editor. Avian molecular evolution and systematic. San Diego, CA: Academic Press. p 83--119
  • Yacoub HA, Fathi MM. (2013). Phylogenetic analysis using d-loop marker of mtDNA of Saudi native chicken strains. Mitochondrial DNA 24:538--51
  • Yacoub HA, Fathi MM, Mahmoud WM. (2013). DNA barcode through cytochrome b gene information of mtDNA in native chicken strains. Mitochondrial DNA 24:528--37
  • Zardoya R, Meyer A. (1996). Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Mol Biol Evol 13:933–42

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