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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 27, 2016 - Issue 1
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Original Article

Structure and evolution of the Phasianidae mitochondrial DNA control region

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Pages 350-354 | Received 17 Dec 2013, Accepted 16 Feb 2014, Published online: 11 Mar 2014

References

  • Arndt A, Smith MJ. (1998). Mitochondrial gene rearrangement in the sea cucumber genus Cucumaria. Mol Biol Evol 15:1009–16
  • Baker AJ, Marshall HD. (1997). Mitochondrial control region sequences as tools for understanding evolution. In: Mindell DP, editor. Avian molecular evolution and systematics. San Diego: Academic Press. p 51–82
  • Bensch S, Härlid A. (2000). Mitochondrial genomic rearrangements in songbirds. Mol Biol Evol 17:107–13
  • Black WC, Roehrdanz RL. (1998). Mitochondrial gene order is not conserved in arthropods: Prostriate and metastriate tick mitochondrial genomes. Mol Biol Evol 15:1772–85
  • Campbell NJH, Barker SC. (1998). An unprecedented major rearrangement in an arthropod mitochondrial genome. Mol Biol Evol 15:1786–7
  • Campbell NJH, Barker SC. (1999). The novel mitochondrial gene arrangement of the cattle tick, Boophilus microplus: Fivefold tandem repetition of a coding region. Mol Biol Evol 16:732–40
  • Eberhard JR, Wright TF, Bermingham E. (2001). Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona. Mol Biol Evol 18:1330–42
  • Gao TX, Li N, Zhang YP, Shi P. (2013). The complete mitochondrial genome of Japanese sandeel Ammodytes personatus (Perciformes, Ammodytidae): Rare structure in control region compared. Mitochondrial DNA 24:320–2
  • He L, Dai B, Zeng B, Zhang X, Chen B, Yue B, Li J. (2009). The complete mitochondrial genome of the Sichuan Hill Partridge (Arborophila rufipectus) and a phylogenetic analysis with related species. Gene 435:23–8
  • Huang ZH, Liao XJ. (2011). Structure of the mitochondrial DNA control region and genetic variation of Chrylosophus pictus. Life Sci Res 15:223–8
  • Huang ZH, Liu NF, Xiao YA, Chen YL, Mei WF, Wen LY, Zhang LX, Yu XP. (2009). Phylogenetic relationships of four endemic genera of the Phasianidae in China based on mitochondrial DNA control region genes. Mol Phylogenet Evol 52:378–83
  • Kan XZ, Li XF, Lei ZP, Wang M, Chen L, Gao H, Yang ZY. (2010). Complete mitochondrial genome of Cabot's tragopan, Tragopan caboti (Galliformes: Phasianidae). Genet Mol Res 9:1204–16
  • Kumazawa Y, Ota H, Nishida M, Ozawa T. (1996). Gene rearrangements in snake mitochondrial genomes: Highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster. Mol Biol Evol 13:1242–54
  • Kumazawa Y, Ota H, Nishida M, Ozawa T. (1998). The complete nucleotide sequence of a snake (Dinodon Semicarinatus) mitochondrial genome with two identical control regions. Genetics 150:313–29
  • Kurabayashi A, Usuki C, Mikami N, Fujiii T, Yonekawa H, Sumida M, Hasegawa M. (2006). Complete nucleotide sequence of the mitochondrial genome of a Malagasy poison frog Mantella madagascariensis: Evolutionary implications on mitochondrial genomes of higher anuran groups. Mol Phylogenet Evol 39:223–36
  • Lee JS, Miya M, Lee YS, Kim CG, Park EH, Aoki Y, Nishida M. (2001). The complete DNA sequence of the mitochondrial genome of the self-fertilizing fish Rivulus marmoratus (Cyprinodontiformes, Rivulidae) and the first description of duplication of a control region in fish. Gene 280:1–7
  • Li X, Ren Q, Kan X, Qian C, Li X, Qian M. (2013). Complete mitochondrial genome of the ring-necked pheasant, Phasianus colchicus (Galliformes: Phasianidae). Mitochondrial DNA 24:89–90
  • Librado P, Rozas J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–2
  • Lyrholm T, Leimar O, Gyllensten U. (1996). Low diversity and biased substitution patterns in the mitochondrial DNA control region of sperm whales: Implications for the estimates of time since common ancestry. Mol Biol Evol 13:1318–26
  • Ma LL, Zhang XY, Yue BS, Ran JH. (2010). Complete mitochondrial genome of the Chinese Monal pheasant Lophophorus lhuysii, with phylogenetic implication in Phasianidae. Mitochondrial DNA 21:5–7
  • Marshall HD, Baker AJ. (1997). Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris). Mol Biol Evol 14:173–84
  • Mindell DP, Sorenson MD, Dimcheff DE. (1998). Multiple independent origins of mitochondrial gene order in birds. Proc Natl Acad Sci USA 95:10693–7
  • Nishibori M, Hayashi T, Tsudzuki M, Yamamoto Y, Yasue H. (2001). Complete sequence of the Japanese quail (Coturnix japonica) mitochondrial genome and its genetic relationship with related species. Anim Genet 32:380–5
  • Nishibori M, Shimogiri T, Hayashi T, Yasue H. (2005). Molecular evidence for hybridization of species in the genus Gallus except for Gallus varius. Anim Genet 36:367–75
  • Nishibori M, Tsudzuki M, Hayashi T, Yamamoto Y, Yasue H. (2002). Complete nucleotide sequence of the Coturnix chinensis (blue-breasted quail) mitochondrial genome and a phylogenetic analysis with related species. J Hered 93:439–44
  • Quinn TW, Wilson AC. (1993). Sequence evolution in and around the mitochondrial control region in birds. J Mol Evol 37:417–25
  • Rand DM. (1993). Endotherms, ectotherms, and mitochondrial genome size variation. J Mol Evol 37:281–95
  • Randi E, Lucchini V. (1998). Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J Mol Evol 47:449–62
  • Ruokonen M, Kvist L. (2002). Structure and evolution of the avian mitochondrial control region. Mol Phylogenet Evol 23:422–32
  • Shao R, Barker SC. (2003). The highly rearranged mitochondrial genome of the plague thrips, Thrips imaginis (Insecta: Thysanoptera): Convergence of two novel gene boundaries and an extraordinary arrangement of rRNA genes. Mol Biol Evol 20:362–70
  • Shen YY, Liang L, Sun YB, Yue BS, Yang XJ, Murphy RW, Zhang YP. (2010). A mitogenomic perspective on the ancient, rapid radiation in the Galliformes with an emphasis on the Phasianidae. BMC Evol Biol 10:132
  • Tamura K, Nei M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–26
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol 28:2731–9
  • Thompson JD, Gibson TJ, Plewniak F. (1997). The Clustal X windows interface flexible strategies for multiple sequence alignment aided by quality analysis tool. Nucleic Acid Res 24:4876–82
  • Valverde JR, Marco R, Garesse R. (1994). A conserved heptamer motif for ribosomal RNA transcription termination in animal mitochondria. Proc Natl Acad Sci USA 91:5368–71
  • Walberg MW, Clayton DA. (1981). Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res 9:5411–21
  • Xiao YS, Song N, Li J, Xiao ZZ, Gao TX. (2013). Significant population genetic structure detected in the small yellow croaker Larimichthys polyactis inferred from mitochondrial control region. Mitochondrial DNA 24:1–11
  • Xu TJ, Cheng YZ, Sun YN, Shi G, Wang RX. (2011). The complete mitochondrial genome of bighead croaker, Collichthys niveatus (Perciformes, Sciaenidae): Structure of control region and phylogeneic considerations. Mol Biol Rep 38:4673–85
  • Yang Z. (1996). Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol Evol 11:367–72
  • Zeng T, Tu F, Ma L, Yan C, Yang N, Zhang X, Yue B, Ran J. (2013). Complete mitochondrial genome of blood pheasant (Ithaginis cruentus). Mitochondrial DNA 24:484–6
  • Zhang H, Zhang Y, Zhang XM, Song N, Gao TX. (2013). Special structure of mitochondrial DNA control region and phylogenetic relationship among individuals of the black rockfish, Sebastes schlegelii. Mitochondrial DNA 24:151–7
  • Zhang Y, Zhang H, Gao TX, Miao ZQ. (2011). Structure of mitochondrial DNA control region and molcular phylogenetic relationship among three flounders of genus Pleuronectes. Bioch Syst Ecol 39:627–34
  • Zhong LQ, Song C, Wang MH, Chen YM, Qin Q, Pan JL, Chen XH. (2013). Genetic diversity and population structure of yellow catfish Pelteobagrus fulvidraco from five lakes in the middle and lower reaches of the Yangtze River, China, based on mitochondrial DNA control region. Mitochondrial DNA 24:552–8

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