References
- CLC Genomics Workbench v6.5.1 (2014). Available at http://www.clcbio.com/products/clcgenomicsworkbench/ (Accessed 21 October 2013)
- Dai X, Hu Q, Cai Q, Feng K, Ye N, Tuskan GA, Milne R, et al. (2014). The willow genome and divergent evolution from poplar after the common genome duplication. Cell Res 24:1274–7
- Day A, Goldschmidt-Clermont M. (2011). The chloroplast transformation toolbox: Selectable markers and marker removal. Plant Biotechnol J 9:540–53
- Huang DI, Hefer CA, Kolosova N, Douglas CJ, Cronk QCB. (2014). Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars, Populus balsamifera and P. trichocarpa (Salicaceae). New Phytol 204:693–703
- McFadden GI, van Dooren GG. (2004). Evolution: Red algal genome affirms a common origin of all plastids. Curr Biol 14:R514–16
- Pennisi E. (2007). Taxonomy. Wanted: A barcode for plants. Science 318:190–1
- Ravi V, Khurana JP, Tyagi AK, Khurana P. (2008). An update on chloroplast genomes. Plant Syst Evol 271:101–22
- Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, et al. (2006). The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313:1596–604
- Wang L, Qi XP, Xiang QP, Heinrichs J, Schneider H, Zhang XC. (2010). Phylogeny of the paleotropical fern genus Lepisorus (Polypodiaceae, Polypodiopsida) inferred from four chloroplast genome regions. Mol Phylogenet Evol 54:211–25
- Wang L, Wu ZQ, Bystriakova N, Ansell SW, Xiang QP, Heinrichs J, Schneider H, et al. (2011). Phylogeography of the Sino-Himalayan fern Lepisorus clathratus on “The roof of the world”. PLoS ONE 6:e25896
- Wu ZQ, Ge S. (2012). Phylogeny of the BEP clade in grasses revisited: Evidence from whole genome sequences of chloroplast. Mol Phylogenet Evol 62:573–8
- Wu ZQ, Ge S. (2014). The whole chloroplast genome of wild rice (Oryza australiensis). Mitochondrial DNA [Epub ahead of print]. DOI: 10.3109/19401736.2014.928868
- Wyman SK, Jansen RK, Boore JL. (2004). Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252–5