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Mitochondrial DNA
The Journal of DNA Mapping, Sequencing, and Analysis
Volume 26, 2015 - Issue 1
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Research Articles

Genetic differentiation between red deer from different sample sites on the Tianshan Mountains (Cervus elaphus), China

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Pages 101-111 | Received 03 Aug 2014, Accepted 01 Nov 2014, Published online: 28 Nov 2014

References

  • Bandelt HJ, Forster P, Rohl A. (1999). Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37–48
  • Cassens I, Mardulyn P, Milinkovitch MC. (2005). Evaluating intraspecific ‘network’ construction methods using simulated sequence data: Do existing algorithms outperform the global maximum parsimony approach? Syst Biol 54:363–72
  • Excoffier L, Laval G, Schneider S. (2005). Arlequin version 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50
  • Goudet J. (2001). FSTAT (Version 2.9.3.), a program to estimate and test gene diversities and fixation indices. Department of Ecology & Evolution Biology, Lausanne, Switzerland. Available at: http://www.unil.ch/izea/softwares/fstat.html (Accessed 13 November 2014).
  • Jia B, Li RY, Zhao ZS, Yan GQ, Xi JF, Blair HT, Li DQ, et al. (2011). Analysis of genetic diversity and phylogenetic relationship of red deer subspecies in XinJiang, China. Anim Sci J 82:517–22
  • Kuznetsova MV, Danilkin AA, Kholodova MV. (2012). Phylogeography of Red Deer (Cervus elaphus): Data of analysis of polymorphism of the mitochondrial gene for cytochrome b. Biol Bull 9:323–30
  • Li JY, Wang KZ, Li YP, Sun GH, Chu CH, Li LQ, Zhu ZX. (2006). Geomorphological features, crustal composition and geological evolution of the Tianshan Mountains. Geol Bull China 25:895–909
  • Li M, Wang XM, Sheng HL, Tamate H, Masuda R, Nagata J, Ohtaishi N. (1998). Origin and genetic diversity of four subspecies of red deer (Cervus elaphus). Zool Res 19:177–83
  • Ludt CJ, Schroeder W, Rottmann O, Kuehn R. (2004). Mitochondrial DNA phylogeography of red deer (Cervus elaphus). Mol Phylogenet Evol 31:1064–83
  • Mahmut H, Ganzorig S, Onuma M. (2001). A preliminary study of the genetic diversity of Xinjiang Tarim red deer (Cervus elaphus yarkandensis) using the microsatellite DNA method. Jpn J Vet Res 49:231–7
  • Mahmut H, Masuda R, Onuma M, Takahash M, Nagata J, Suzuki M, Ohtaishi N. (2002). Molecular phylogeography of the Red Deer (Cervus elaphus) populations in Xinjiang of China: Comparison with other Asian, European, and North American Populations. Zool Sci 19:485–95
  • Nei M. (1987). Molecular evolutionary genetics. New York: Columbia University Press
  • Paekau D. (2003). An empirical exploration of data quality in DNA-based population inventories. Mol Ecol 12:12375–87
  • Park SDE. (2001). Trypanotolerance in West African Cattle and the population genetic effects of selection. [PhD thesis]. Dublin (Ireland): University of Dublin
  • Pitra C, Fickel J, Meijaard E, Groves CP. (2004). Evolution and phylogeny of old world deer. Mol Phylogenet Evol 33:880–95
  • Polziehn RO, Hamr J, Mallory FF, Strobeck C. (2000). Microsatellite analysis of North American wapiti (Cervus elaphus) populations. Mol Ecol 9:1561–76
  • Polziehn RO, Strobeck C. (2002). A phylogenetic comparison of red deer and wapiti using mitochondrial DNA. Mol Phylogenet Evol 22:342–56
  • Pritchard JK, Stephens M, Donnelly P. (2000). Inference of population structure using multilocus genotype data. Genetics 155:945–59
  • Randi E, Mucci N, Claro-Herguetta F, Bonnet A, Douzery EJP. (2001). A mitochondrial DNA control region phylogeny of the Cervinae: Speciation in Cervus and its implications for conservation. Anim Conserv 4:1–11
  • Risalat T, Askar M, Rizihan A, Amila A, Mahmut H. (2012). An improved method for DNA extraction from the faeces of Cervus elaphus. Agric J Anhui Agric Sci 40:5739–54
  • Rozas J. (2009). DNA sequence polymorphism analysis using DnaSP. Methods Mol Biol 537:337–50
  • Schneider S, Roessli D, Excoffier L. (2000). ARLEQUIN Ver. 2.0: A software for population genetics data analysis. Switzerland: Genetics and Biometry Laboratory, University of Geneva
  • Shi YF, Shan XN, Li J, Shi TY, Zheng AL. (2004). Sequence analysis and phylogeny of Deer (Cervidae) mtDNA control regions. Acta Genet Sin 31:395–402
  • Stankovic A, Doan K, Mackiewicz P, Ridush B, Baca M, Gromadka R, Socha P, et al. (2011). First ancient DNA sequences of the Late Pleistocene red deer (Cervus elaphus) from the Crimea, Ukraine. Quat Int 245:262–7
  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Sudhir K. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum Parsimony Method. Mol Biol Evol 28:2731–9
  • Tamate HB, Tsuchiya T. (1995). Mitochondrial DNA polymorphism in subspecies of the Japanese sika deer, Cervus nippon. J Heredity 86:211–15
  • Tian XM, Zhang MH, Luo LY. (2008). Sex determination of wild red deer by feces. J Northeast Forest Univ 36:68–9
  • Xing XM, Yang FH, Su WL, Li YQ. (2006). Analysis of the genetic diversity of Wapiti. J Jilin Agric Univ 28:325–9
  • Xing XM, Yang FH, Su WL, Li YQ. (2006). Analyzing the genetic diversity of Wapiti of Xinjiang. Special Wild Econ Anim Plant Res 1:1–4
  • Wasser SK, Davenport B, Ramage ER, Hunt KE, Parker M, Clarke C, Stenhouse G. (2004). Scat detection dogs in wildlife research and management: Application to grizzly and black bears in the Yellowhead Ecosystem, Alberta, Canada. Can J Zool 82:475–92
  • Wilson PJ, White BN. (1998). Sex identification of elk (Cervus elaphus Canadensis), moose (Alces alces) and white-tailed deer (Odocoileus virginianus) using the polymerase chain reaction. J Forensic Sci 43:477–82
  • Taibot J, Haigh J, Planie YA. (1996). Parentage evaluation test in North American elk (wapiti) using microsatellites of ovine and bovine origin. Anim Genet 27:117–19

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