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Mitochondrial DNA Part A
DNA Mapping, Sequencing, and Analysis
Volume 27, 2016 - Issue 4
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Short Communication

Weak genetic differentiation in cobia, Rachycentron canadum from Indian waters as inferred from mitochondrial DNA ATPase 6 and 8 genes

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Pages 2819-2821 | Received 17 Jan 2015, Accepted 04 May 2015, Published online: 15 Jun 2015

References

  • Arnason E. (2004). Mitochondrial cytochrome b DNA variation in the high-fecundity Atlantic cod: Trans-Atlantic clines and shallow gene genealogy. Genetics 166:1871–85
  • Avise JC. (2000). Phylogeography: The history and formation of species. Cambridge, UK: Harvard University Press
  • Clement M, Posada D, Crandall KA. (2000). TCS: A computer programme to estimate gene genealogies. Mol Ecol 9:1657–60
  • CMFRI. (2013). Cochin: Central Marine Fisheries Research Institute Annual Report 2013–14
  • Crandall KA. (1996). Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences. Mol Biol Evol 13:115–31
  • Díaz-Ferguson E, Haney R, Wares J, Silliman B. (2010). Population genetics of a Trochid gastropod broadens picture of Caribbean Sea connectivity. PLoS One 5:e12675
  • Divya PR, Gopalakrishnan A, Basheer VS, Swaminathan R, Mohitha C, Joy L, Kumar R, et al. (2015). Mitochondrial ATPase 6/8 genes to infer the population genetic structure of silver pomfret fish Pampus argenteus along the Indian waters. Mitochondrial DNA 26:189–94
  • Excoffier L, Lischer HL. (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Res 10:564–7
  • Gold JR, Giresi MM, Renshaw MA, Gwo JC. (2013). Population genetic comparisons among Cobia from the Northern Gulf of Mexico, US Western Atlantic, and Southeast Asia. N Am J Aquacult 75:57–63
  • Gopakumar G, Abdul NAK, Tamilmani G, Sakthivel M, Kalidas C, Ramamoorthy N, Palanichamy S, et al. (2012). First experience in the larviculture of cobia, Rachycentron canadum (Linnaeus, 1752) in India. Ind J Fish 59:59–63
  • Grant WAS, Bowen BW. (1998). Shallow population histories in deep evolutionary lineages of marine fishes: Insights from sardines and anchovies and lessons for conservation. J Hered 89:415–26
  • Gupta A, Lal KK, Mohindra V, Singh RK, Punia P, Dwivedi AK, Gupta BK, et al. (2013). Genetic divergence in natural populations of bronze featherback Notopterus notopterus (Osteoglossiformes: Notopteridae) from five Indian rivers, analyzed through mtDNA ATPase6/8 regions. Meta Gene 1:50–7
  • Habib M, Lakra WS, Mohindra V, Lal KK, Punia P, Singh RK, Khan AA. (2012). Assessment of ATPase 8 and ATPase 6 mtDNA sequences in genetic diversity studies of Channa marulius (Channidae: Perciformes). Proc Natl Acad Sci India B 4:497–501
  • Hall TA. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–8
  • Kathirvelpandian A, Gopalakrishnan A, Lakra WS, Krishna G, Sharma R, Divya PR, Kumar R, Jena JK. (2014). Mitochondrial ATPase 6/8 genes reveal genetic divergence in the Coilia dussumieri (Valenciennes, 1848) populations of north east and northwest coasts of India. Mol Biol Rep 41:3723–31
  • Librado P, Rozas J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451–2
  • McGlashan DJ, Hughes JM. (2001). Genetic evidence for historical continuity between populations of the Australian freshwater fish Craterocephalus stercusmuscarum (Atherinidae) east and west of the Great Dividing Range. J Fish Biol 59:55–67
  • Miller SA, Dykes DD, Polesky HF. (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acid Res 16:1215
  • Neigel JE. (1997). A comparison of alternative strategies for estimating gene flow from genetic markers. Ann Rev Ecol Syst 28:105–28
  • Ovenden RJ, Street R. (2003). Genetic population structure of mangrove jack, Lutjanus argentimaculatus (Forsska l). Mar Freshwater Res 54:127–37
  • Pampoulie C, Stefánsson MO, Jörundsdóttir TD, Danilowicz BS, Daníelsdóttir AK. (2008). Recolonization history and large scale dispersal in the open sea: The case study of the North Atlantic cod, Gadus morhua. L. Biol J Linnean Soc 94:315–29
  • Phinchongsakuldit J, Chaipakdee P, Collins JF, Jaroensutasinee M, Brookfield JF. (2013). Population genetics of cobia (Rachycentron canadum) in the Gulf of Thailand and Andaman Sea: Fisheries management implications. Aquacult Int 21:197–217
  • Rokas A, Atkinson RJ, Webster L, Csóka G, Stone GN. (2003). Out of Anatolia: Longitudinal gradients in genetic diversity support an eastern origin for a circum-Mediterranean oak gallwasp Andricus quercustozae. Mol Ecol 12:2153–74
  • Rupesh KL, Kuldeep K, Rajeev KS, Mohindra V, Gupta A, Masih P, Dwivedi AK, et al. (2014). Genealogy and phylogeography of Cyprinid fish Labeo rohita (Hamilton, 1822) inferred from ATPase 6 and 8 mitochondrial DNA gene analysis. Curr Zool 60:460–71
  • Sajeevan MK. (2011). Systematics, life history traits, abundance and stock assessment of cobia Rachycentron canadum (linnaeus, 1766) occurring in Indian waters with special reference to the northwest coast of India [PhD thesis]. Cochin University of Science and Technology
  • Salari MA, Gilkolaei SR, Savari A, Zolgharnein H, Nabavi B, Mohammad S. (2009). Population genetic structure of cobia, Rachycentron canadum revealed by microsatellite markers. JABS 3:103–7
  • Shaffer RV, Nakamura EL. (2011). Synopsis of biological data on the cobia Rachycentron canadum. Pisces: Rachycentridae. NOAA Technical Report. NMFS 82 (FAO Fisheries Synopsis 153), 21 p
  • Sivasundar A, Bermingham E, Ortí G. (2001). Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers. Mol Ecol 10:407–17
  • Taheri S, Motallebi AA, Fazlara A, Aghababyan A, Aftabsavar Y. (2012). Changes of fatty acid profiles in fillets of Cobia (Rachycentron canadum) during frozen storage. Iran J Fish Sci 11:204–13
  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. (2013). MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–9
  • Templeton AR, Sing CF. (1993). A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping: IV. Nested analyses with cladogram uncertainty and recombination. Genetics 134:659–69
  • Waples RS. (1998). Separating the wheat from the chaff: Patterns of genetic differentiation in high gene flow species. J Hered 89:438–50
  • Ward RD, Woodmark M, Skibinski DOF. (1994). A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. J Fish Biol 44:213–32
  • Zardoya R, Vollmer DM, Craddock C, Streelman JT, Karl S, Meyer A. (1996). Evolutionary conservation of microsatellite flanking regions and their use in resolving the phylogeny of cichlid (Pisces: Perciformes). Proc R Soc B 263:1589–98

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