The mitochondrial genome of the winter stonefly Apteroperla tikumana (Plecoptera, Capniidae)

References

• Bernt M, Donath A, Jühling F, Externbrink F, Florentz C, Fritzsch G, Pütz J, et al. (2013). MITOS: Improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol 69:313–19
   PubMed Web of Science ®Google Scholar
• Cameron SL, Barker SC, Whiting MF. (2006). Mitochondrial genomics and the new insect order Mantophasmatodea. Mol Phylogenet Evol 38:274–9
   PubMed Web of Science ®Google Scholar
• Cameron SL, Whiting MF. (2007). Mitochondrial genomic comparisons of the subterranean termites from the Genus Reticulitermes (Insecta: Isoptera: Rhinotermitidae). Genome 50:188–202
   PubMed Web of Science ®Google Scholar
• Chen AH. (2013). Complete mitochondrial genome of the double-striped cockroach Blattella bisignata (Insecta: Blattaria: Blaberoidea). Mitochondrial DNA 24:14–16
   PubMed Web of Science ®Google Scholar
• Elbrecht V, Leese F. (2015). The mitochondrial genome of the Arizona Snowfly Mesocapnia arizonensis (Plecoptera, Capniidae). Mitochondrial DNA. [Epub ahead of print]. doi:10.3109/19401736.2015.1018223
   Web of Science ®Google Scholar
• Elbrecht V, Poettker L, John U, Leese F. (2013). The complete mitochondrial genome of the stonefly Dinocras cephalotes (Plecoptera, Perlidae). Mitochondrial DNA. [Epub ahead of print]. doi: 10.3109/19401736.2013.830301
   PubMed Web of Science ®Google Scholar
• Fochetti R, de Figueroa JMT. (2008). Global diversity of stoneflies (Plecoptera; Insecta) in freshwater. Hydrobiologia 595:365–77
   Web of Science ®Google Scholar
• Huang M, Wang Y, Liu X, Li W, Kang Z, Wang K, Yang D. (2015). The complete mitochondrial genome and its remarkable secondary structure for a stonefly Acroneuria hainana Wu (Insecta: Plecoptera, Perlidae). Gene 557:52–60
   PubMed Web of Science ®Google Scholar
• Kômoto N, Yukuhiro K, Ueda K, Tomita S. (2011). Exploring the molecular phylogeny of plasmids with whole mitochondrial genome sequences. Mol Phylogenet Evol 58:43–52
   PubMed Web of Science ®Google Scholar
• Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWillian H, Valentin F, et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–8
   PubMed Web of Science ®Google Scholar
• Li H, Durbin R. (2009). Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics 25:1754–60
   PubMed Web of Science ®Google Scholar
• Liu S, Li Y, Lu J, Su X, Tang M, Zhang R, Zhou L, et al. (2013). SOAPBarcode: Revealing arthropod biodiversity through assembly of Illumina shotgun sequences of PCR amplicons. Methods Ecol Evol 4:1142–50
   Web of Science ®Google Scholar
• Misof B, Liu S, Meusemann K, Peters RS, Donath A, Mayer C, Frandsen PB, et al. (2014). Phylogenomics resolves the timing and pattern of insect evolution. Science 346:763–7
   PubMed Web of Science ®Google Scholar
• Nelson CR. (1996). Capniidae. Winter Stoneflies. Version 01 January 1996. Available at: http://tolweb.org/Capniidae/13943/1996.01.01.
   Google Scholar
• Nelson CR, Baumann RW. (1989). Systematics and distribution of the winter stonefly genus Capnia (Plecoptera: Capniidae) in North America. West N Am Natural 49:289–363
   Google Scholar
• Qian Y, Wu H, Ji X, Yu W, Du Y. (2014). Mitochondrial genome of the Stonefly Kamimuria wangi (Plecoptera: Perlidae) and phylogenetic position of plecoptera based on mitogenomes. PLoS One 9:e86328
   PubMed Web of Science ®Google Scholar
• Saitou N, Nei M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–25
   PubMed Web of Science ®Google Scholar
• Schattner P, Brooks AN, Lowe TM. (2005). The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res 33:686–9
   PubMed Web of Science ®Google Scholar
• Shimizu T. (1997). Designation of lectotypes for three Japanese stoneflies (Plecoptera), with reference to the genus Apteroperla Matsumura. Jpn J Entomol 65:531–5
   Google Scholar
• Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–9
   PubMed Web of Science ®Google Scholar
• Tan M, Zhang R, Hardman C, Zhou X. (2015). Mitochondrial genome of Hylaeusdilatatus (Hymenoptera: Colletidae). Mitochondrial DNA. [Epub ahead of print]. doi: 10.3109/19401736.2014.989511
   Web of Science ®Google Scholar
• Tang M, Tan M, Meng G, Yang S, Su X, Liu S, Song W, et al. (2014). Multiplex sequencing of pooled mitochondrial genomes – A crucial step toward biodiversity analysis using mito-metagenomics. Nucleic Acids Res 42.22:e166
   Web of Science ®Google Scholar
• Wan X, Kim MI, Kim MJ, Kim I. (2012). Complete mitochondrial genome of the free-living Earwig, Challia fletcheri (Dermaptera: Pygidicranidae) and phylogeny of Polyneoptera. PLoS One 7:e42056
   PubMed Web of Science ®Google Scholar
• Xie Y, Wu G, Tang J, Luo R, Patterson J, Liu S, Huang W, et al. (2014). SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads. Bioinformatics 30:1660–6
   PubMed Web of Science ®Google Scholar
• Zhou X, Li Y, Liu S, Yang Q, Su X, Zhou L, Tang M, et al. (2013). Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification. Gigascience 2:1--12
   PubMed Web of Science ®Google Scholar
• Zhou Z, Huang Y, Shi F. (2007). The mitochondrial genome of Ruspolia dubia (Orthoptera: Conocephalidae) contains a short A+ T-rich region of 70 bp in length. Genome 50:855–66
   PubMed Web of Science ®Google Scholar