Complete mitochondrial genome of the scleractinian coral Porites rus

References

• Bronstein O, Loya Y. (2011). Daytime spawning of Porites rus on the coral reefs of Chumbe Island in Zanzibar, Western Indian Ocean (WIO). Coral Reefs 30:441
   Web of Science ®Google Scholar
• Comeau S, Carpenter RC, Edmunds PJ. (2013). Effects of feeding and light intensity on the response of the coral Porites rus to ocean acidification. Mar Biol 160:1127–34
   Web of Science ®Google Scholar
• Darriba D, Taboada GL, Doallo R, Posada D. (2012). jModelTest 2: more models, new heuristics and parallel computing. Nat Meth 30; 9:772
   PubMed Web of Science ®Google Scholar
• Del Río-Portilla MA, Vargas-Peralta CE, Paz-García DA, Lafarga De La Cruz F, Balart EF, García-de-León FJ. (2014). The complete mitochondrial DNA of endemic Eastern Pacific coral (Porites panamensis). Mitochondrial DNA 1736:1–2
   Google Scholar
• Forskål P. (1775). Descriptiones animalium avium, amphibiorum, piscium, insectorum, vermium; quæ in itinere orientali observavit Petrus Forskål. Post mortem auctoris edidit Carsten Niebuhr. Adjuncta est materia medica Kahirina atque tabula maris rubri geographica. p. 1–20, I-XXXIV [= 1-34], 1-164, 1 map. Hauniæ. (Möller)
   Google Scholar
• Fukami H, Chen CA, Budd AF, Collins A, Wallace C, Chuan Y, Chen C, Dai CF, Iwao K, Sheppard C, Knolton N. (2008). Mitochondrial and nuclear genes suggest that stony corals are monophyletic but most families of stony corals are not (Order Scleractinia, Class Anthozoa, Phylum Cnidaria). PLoS One 3:e3222
   PubMed Web of Science ®Google Scholar
• Heinl S, Wibberg D, Eikmeyer F, Szczepanowski R, Blom J, Linke B, Goesmann A, et al. (2012). Insights into the completely annotated genome of Lactobacillus buchneri CD034, a strain isolated from stable grass silage. J Biotechnol 161:153–66, 1–14
   PubMed Web of Science ®Google Scholar
• Jaubert J. (1977). Light, metabolism and growth forms of the hermatypic scleractinian coral Synaraea convexa Verrill in the lagoon of Moorea (French Polynesia). Third International Coral Reef Symposium, Florida, p. 483–8
   Google Scholar
• Küberl A, Schneider J, Thallinger G, Anderl I, Wibberg D, Hajek T, Jaenicke S, et al. (2011). High-quality genome sequence of Pichia pastoris CBS7435. J Biotechnol 154:312–20
   PubMed Web of Science ®Google Scholar
• Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, et al. (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23:2947–8
   PubMed Web of Science ®Google Scholar
• Maus I, Wibberg D, Stantscheff R, Cibis K, Eikmeyer FG, König H, Pühler A, Schlüter A. (2013). Complete genome sequence of the hydrogenotrophic Archaeon Methanobacterium sp. Mb1 isolated from a production-scale biogas plant. J Biotechnol 168:734–6
   PubMed Web of Science ®Google Scholar
• Medina M, Collins A, Takaoka T, Kuehl J, Boore J. (2006). Naked corals: Skeleton loss in Scleractinia. Proc Natl Acad Sci USA 103:9096–100
   PubMed Web of Science ®Google Scholar
• Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, et al. (2003). GenDB – An open source genome annotation system for prokaryote genomes. Nucleic Acids Res 31:2187–95
   PubMed Web of Science ®Google Scholar
• Padilla-Gamiño J, Hanson K, Stat M, Gates R. (2012). Phenotypic plasticity of the coral Porites rus: Acclimatization responses to a turbid environment. J Exp Mar Biol Ecol 434–5, 71–80
   Web of Science ®Google Scholar
• Penland L, Kloulechad J, Idip D, van Woesik R. (2004). Coral spawning in the western Pacific Ocean is related to solar insolation: Evidence of multiple spawning events in Palau. Coral Reefs 23:133–40
   Web of Science ®Google Scholar
• Romano SL, Cairns SD. (2000). Molecular phylogenetic hypotheses for the evolution of scleractinian corals. Bull Mar Sci 67:1043–68
   Web of Science ®Google Scholar
• Schwientek P, Szczepanowski R, Rückert C, Kalinowski J, Klein A, Selber K, Wehmeier UF, et al. (2012). The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110. BMC Genomics 13:112
   PubMed Web of Science ®Google Scholar
• Talavera G, Castresana J. (2007). Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56:564–77
   PubMed Web of Science ®Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. (2013). MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–9
   PubMed Web of Science ®Google Scholar
• Veron JEN, Odorico DM, Chen CA, Miller DJ. (1996). Reassessing evolutionary relationships of scleractinian corals. Coral Reefs 15:1–9
   Web of Science ®Google Scholar
• Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, et al. (2011). Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. J Biotechnol 155:50–62
   PubMed Web of Science ®Google Scholar
• Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, et al. (2013). Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14. J Biotechnol 167:142–55
   PubMed Web of Science ®Google Scholar