Genetic identification and phylogenetic relationships of Indian clariids based on mitochondrial COI sequences

References

• Agnese JF, Teugels GG. (2001). Genetic evidence for monophyly of the genus Heterobranchus and paraphyly of the genus Clarias (Siluriformes, Clariidae). Copeia 2001:548–52
   Google Scholar
• Agnese JF, Teugels GG. (2005). Insight into the phylogeny of African Clariidae (Teleostei, Siluriformes): Implications for their body shape evolution, biogeography, and taxonomy. Mol Phylogenet Evol 36:546–53
   PubMed Web of Science ®Google Scholar
• Bridge TW, Haddon AC. (1893). Contributions to the anatomy of fishes: II. The air-bladder and Weberian Ossicles in the siluroid fishes. Vol. 2. London: Royal Society
   Google Scholar
• Dowling TE, Tibbets CA, Minckley WL, Smith GR. (2002). Evolutionary relationships of the plagopterins (Teleostei: Cyprinidae) from cytochrome b sequences. Copeia 2002:665–78
   Web of Science ®Google Scholar
• FAO. © 2010–2015. Cultured Aquatic Species Information Programme. Clarias gariepinus. Cultured Aquatic Species Information Programme. Text by Pouomogne, V. In: FAO Fisheries and Aquaculture Department [online]. Rome: FAO 2010–2015
   Google Scholar
• Ferraris CJ. (2007). Checklist of catfishes, recent and fossil (Osteichthyes: Siluriformes), and catalogue of siluriform primary types. Auckland, New Zealand: Magnolia Press. p 1–628
   Google Scholar
• Hall TA. (1999). BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In: Nucleic acids symposium series, vol. 41, p 95–8
   Google Scholar
• Jayaram KC. (2006). Catfishes of India. New Delhi: Narendra Publishing House. xxii+383 + 11pls [WorldCat]
   Google Scholar
• Kimura M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–20
   PubMed Web of Science ®Google Scholar
• Lakra WS, Goswami M, Gopalakrishnan A. (2009). Molecular identification and phylogenetic relationships of seven Indian Sciaenids (Pisces: Perciformes, Sciaenidae) based on 16S rRNA and cytochrome c oxidase subunit I mitochondrial genes. Mol Biol Rep 36:831–9
   PubMed Web of Science ®Google Scholar
• Miller SA, Dykes DD, Polesky HF. (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16:1215
   PubMed Web of Science ®Google Scholar
• Misra KS. (1976). Teleostomi: Cypriniformes; Siluri. In: The fauna of India and the adjacent countries, Pisces, 2nd ed, vol. III. Delhi, India: The Controller of Publications. p xxi+367
   Google Scholar
• Mohindra V, Singh RK, Palanichamy M, Ponniah AG, Lal KK. (2007). Genetic identification of three species of the genus Clarias using allozyme and mitochondrial DNA markers. J Appl Ichthyol 23:104–9
   Web of Science ®Google Scholar
• Nawar G. (1954). On the anatomy of Clarias lazera: I. Osteology. J Morphol 94:551–85
   Web of Science ®Google Scholar
• Nelson EM. (1948). The comparative morphology of the Weberian apparatus of the Catostomidae and its significance in systematics. J Morphol 83:225–51
   PubMed Web of Science ®Google Scholar
• Ng HH, Hong DK, Tu NV. (2011). Clarias gracilentus, a new walking catfish (Teleostei: Clariidae) from Vietnam and Cambodia. Zootaxa 2823:61–8
   Google Scholar
• Ng HH, Kottelat M. (2008). The identity of Clarias batrachus (Linnaeus, 1758), with the designation of a neotype (Teleostei: Clariidae). Zool J Linn Soc 153:725–32
   Web of Science ®Google Scholar
• Otero O, Gayet M. (2001). Palaeoichthyofaunas from the Lower Oligocene and Miocene of the Arabian Plate: Palaeoecological and palaeobiogeographical implications. Palaeogeogr Palaeoclimatol Palaeoecol 165:141–69
   Web of Science ®Google Scholar
• Padmakumar KG, Bindu L, Basheer VS, Gopalakrishnan A. (2010). Threatened fishes of the world: Clarias dussumieri dussumieri (Valenciennes, 1840)(Clariidae). Environ Biol Fishes 87:297–8
   Web of Science ®Google Scholar
• Padmakumar KG, Krishnan A, Bindu L, Sreerekha PS, Joseph N. (2004). Captive breeding for conservation of endemic fishes of Western Ghats, India. Kumarakom, Kottayam: RARS, Kerala Agricultural University. p 79
   Google Scholar
• Smith GR, Dowling TE, Gobalet KW, Lugaski TSDK, Shiozawa DK, Evans RP. (2002). Biogeography and timing of evolutionary events among Great Basin fishes. Great Basin Aquatic Systems History 33:175–234
   Google Scholar
• Sullivan JP, Lundberg JG, Hardman M. (2006). A phylogenetic analysis of the major groups of catfishes (Teleostei: Siluriformes) using rag1 and rag2 nuclear gene sequences. Mol Phylogenet Evol 41:636–62
   PubMed Web of Science ®Google Scholar
• Talwar PK, Jhingran AG. (1991). Systematic account of Siluriformes fishes. In: Inland fishes of India and adjacent countries, vol. 2. New Delhi: Oxford and IBH Publishing Company. p 1158
   Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. (2013). MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–9
   PubMed Web of Science ®Google Scholar
• Tilak R. (1963). Relationships between the osteocranium and weberian apparatus in two Indian catfishes of the genus Clarias (Siluridae). Copeia 9:623–9
   Google Scholar
• Timm J, Figiel M, Kochzius M. (2008). Contrasting patterns in species boundaries and evolution of anemone fishes (Amphiprioninae, Pomacentridae) in the centre of marine biodiversity. Mol Phylogenet Evol 49:268–76
   PubMed Web of Science ®Google Scholar
• Van Couvering JAH. (1977). Early records of freshwater fishes in Africa. Copeia 1:163–6
   Google Scholar
• Ward RD, Zemlak TS, Innes BH, Last PR, Hebert PD. (2005). DNA barcoding Australia's fish species. Philos Trans R Soc B: Biol Sci 360:1847–57
   PubMed Web of Science ®Google Scholar