Usefulness of FTA® cards as a Pneumocystis-DNA extraction method in bronchoalveolar lavage samples

References

• Vélez L, Correa LT, Maya MA, Mejía P, et al. Diagnostic accuracy of bronchoalveolar lavage samples in immunosuppressed patients with suspected pneumonia: analysis of a protocol. Respir Med. 2007;101:2160–2167.
   PubMed Web of Science ®Google Scholar
• Morris A, Norris KA. Colonization by Pneumocystis jirovecii and its role in disease. Clin Microbiol Rev. 2012;25:297–317.
   PubMed Web of Science ®Google Scholar
• Tasaka S. Pneumocystis pneumonia in human immunodeficiency virus-infected adults and adolescents: current concepts and future directions. Clin Med Insights Circ Respir Pulm Med. 2015;9:19–28.
   PubMedGoogle Scholar
• Jaijakul S, Saksirisampant W, Prownebon J, et al. Pneumocystis jiroveci in HIV/AIDS patients: detection by FTA filter paper together with PCR in noninvasive induced sputum specimens. J Med Assoc Thai. 2005;88(Suppl 4):S294–S299.
   PubMedGoogle Scholar
• Thomas CF Jr, Limper AH. Pneumocystis pneumonia. N Engl J Med. 2004;350:2487–2498.
   PubMed Web of Science ®Google Scholar
• McTaggart LR, Wengenack NL, Richardson SE. Validation of the MycAssay Pneumocystis kit for detection of Pneumocystis jirovecii in bronchoalveolar lavage specimens by comparison to a laboratory standard of direct immunofluorescence microscopy, real-time PCR, or conventional PCR. J Clin Microbiol. 2012;50:1856–1859.
   PubMed Web of Science ®Google Scholar
• Seah C, Richardson SE, Tsui G, et al. Comparison of the FXGTM: RESP (Asp+) real-time PCR assay with direct immunofluorescence and calcofluor white staining for the detection of Pneumocystis jirovecii in respiratory specimens. Med Mycol. 2012;50:324–327.
   PubMed Web of Science ®Google Scholar
• Larsen HH, Huang L, Kovacs JA, et al. A prospective, blinded study of quantitative touch-down polymerase chain reaction using oral-wash samples for diagnosis of Pneumocystis pneumonia in HIV-infected patients. J Infect Dis. 2004;189:1679–1683.
   PubMed Web of Science ®Google Scholar
• Whatman. FTA® protocols: collect transport, archive and access nucleic acids all at room temperature 2002 [Internet] [cited 2009 April 19]. Available from: http://www.whatman.com/FTANucleicAcidCollectionStorageandPurification.aspx.
   Google Scholar
• Smith LM, Burgoyne LA. Collecting, archiving and processing DNA from wildlife samples using FTA databasing paper. BMC Ecol. 2004;4:4.
   PubMedGoogle Scholar
• Ndunguru J, Taylor NJ, Yadav J, et al. Application of FTA technology for sampling, recovery and molecular characterization of viral pathogens and virus-derived transgenes from plant tissues. Virol J. 2005;2:45.
   PubMed Web of Science ®Google Scholar
• Tsukaya H, Iokawa Y, Kondo M, Ohba H. Large-scale general collection of wild-plant DNA in Mustang, Nepal. J Plant Res. 2005;118:57–60.
   PubMed Web of Science ®Google Scholar
• Picard-Meyer E, Barrat J, Cliquet F. Use of filter paper (FTA) technology for sampling, recovery and molecular characterisation of rabies viruses. J Virol Methods. 2007;140:174–182.
   PubMed Web of Science ®Google Scholar
• Li C-C, Beck IA, Seidel KD, Frenkel LM. Persistence of human immunodeficiency virus type 1 subtype B DNA in dried-blood samples on FTA filter paper. J Clin Microbiol. 2004;42:3847–3849.
   PubMed Web of Science ®Google Scholar
• Orlandi PA, Lampel KA. Extraction-free, filter-based template preparation for rapid and sensitive PCR detection of pathogenic parasitic protozoa. J Clin Microbiol. 2000;38:2271–2277.
   PubMed Web of Science ®Google Scholar
• Kato H, Watanabe J, Mendoza Nieto I, Korenaga M, Leishmania species identification using FTA card sampling directly from patients’ cutaneous lesions in the state of Lara, Venezuela. Trans R Soc Trop Med Hyg. 2011;105:561–567.
   PubMed Web of Science ®Google Scholar
• Lampel KA, Orlandi PA, Kornegay L. Improved template preparation for PCR-based assays for detection of food-borne bacterial pathogens. Appl Environ Microbiol. 2000;66:4539–4542.
   PubMed Web of Science ®Google Scholar
• Borman AM, Linton CJ, Miles S-J, et al. Ultra-rapid preparation of total genomic DNA from isolates of yeast and mould using Whatman FTA filter paper technology – a reusable DNA archiving system. Med Mycol. 2006;44:389–398.
   PubMed Web of Science ®Google Scholar
• Menassa N, Bosshard PP, Kaufmann C, et al. Rapid detection of fungal keratitis with DNA-stabilizing FTA filter paper. Invest Ophthalmol Vis Sci. 2010;51:1905–1910.
   PubMed Web of Science ®Google Scholar
• Nuchprayoon S, Saksirisampant W, Jaijakul S, Nuchprayoon I. Flinders Technology Associates (FTA) filter paper-based DNA extraction with polymerase chain reaction (PCR) for detection of Pneumocystis jirovecii from respiratory specimens of immunocompromised patients. J Clin Lab Anal. 2007;21:382–386.
   PubMed Web of Science ®Google Scholar
• Linssen CFM, Jacobs JA, Beckers P, et al. Inter-laboratory comparison of three different real-time PCR assays for the detection of Pneumocystis jiroveci in bronchoalveolar lavage fluid samples. J Med Microbiol. 2006;55:1229–1235.
   PubMed Web of Science ®Google Scholar
• Noordhoek GT, van Embden JD, Kolk AH. Reliability of nucleic acid amplification for detection of Mycobacterium tuberculosis: an international collaborative quality control study among 30 laboratories. J Clin Microbiol. 1996;34:2522–2525.
   PubMed Web of Science ®Google Scholar
• Fredricks DN, Smith C, Meier A. Comparison of six DNA extraction methods for recovery of fungal DNA as assessed by quantitative PCR. J Clin Microbiol. 2005;43:5122–5128.
   PubMed Web of Science ®Google Scholar
• Huggett JF, Miller RF, Taylor MS, et al. Problems of developing molecular diagnostic tests for opportunistic pathogens: the example of Pneumocystis jirovecii. J Eukaryot Microbiol. 2006;53(Suppl 1):S85–S86.
   PubMed Web of Science ®Google Scholar
• Huggett JF, Taylor MS, Kocjan G, et al. Development and evaluation of a real-time PCR assay for detection of Pneumocystis jirovecii DNA in bronchoalveolar lavage fluid of HIV-infected patients. Thorax. 2008;63:154–159.
   PubMed Web of Science ®Google Scholar
• Rodiño J, Rincón N, Aguilar YA, et al. [Microscopic diagnosis of Pneumocystis jirovecii pneumonia in bronchoalveolar lavage and oropharyngeal wash samples of immunocompromised patients with pneumonia]. Biomedica. 2011;31:222–231.
   PubMed Web of Science ®Google Scholar
• QIAGEN. QIAcard FTA® Handbook [Internet]. 2010 [cited 2010 January 22]. Available from: http://www.qiagen.com/selectlocation.aspx?redirect=%2Fliterature%2Frender.aspx%3Fid%3D103493.
   Google Scholar
• Maskell NA, Waine DJ, Lindley A, et al. Asymptomatic carriage of Pneumocystis jiroveci in subjects undergoing bronchoscopy: a prospective study. Thorax. 2003;58:594–597.
   PubMed Web of Science ®Google Scholar
• Pak Yang Chum and Chas Andre, Finnzymes Oy. 2009 [cited 2009 August 26]. Available online at: https://www.thermofisher.com.au/Uploads/file/Scientific/Applications/Life-Science-Research-Technologies/Avoiding-cross-contamination-when-using-the-Harris-Uni-Core-in-Finnzymes’-Direct-PCR-protocols.pdf.
   Google Scholar
• Clinical Laboratory Standards Institute (CLSI). Establishing molecular testing in clinical laboratory environments; Approved guideline. CLSI document MM19-A. [Internet] [cited 2009 February 22]. Available from: http://www.clsi.org/source/orders/free/MM19-a.pdf.
   Google Scholar
• Gupta R, Mirdha BR, Guleria R, et al. Diagnostic significance of nested polymerase chain reaction for sensitive detection of Pneumocystis jirovecii in respiratory clinical specimens. Diagn Microbiol Infect Dis. 2009;64:381–388.
   PubMed Web of Science ®Google Scholar
• Landis JR, Koch GG. The measurement of observer agreement for categorical data. Biometrics. 1977;33:159–174.
   PubMed Web of Science ®Google Scholar
• Cox AP, Tosas O, Tilley A, et al. Constraints to estimating the prevalence of trypanosome infections in East African zebu cattle. Parasit Vectors. 2010;3:82.
   PubMed Web of Science ®Google Scholar
• Wilson IG. Inhibition and facilitation of nucleic acid amplification. Appl Environ Microbiol. 1997;63:3741–3751.
   PubMed Web of Science ®Google Scholar
• Mullen MP, Howard DJ, Powell R, Hanrahan JP. A note on the use of FTA technology for storage of blood samples for DNA analysis and removal of PCR inhibitors. Irish J Agr Food Res. 2009;48:109–113.
   Web of Science ®Google Scholar
• Whatman. Preparación de muestras de ácido nucleico y proteína [Internet] [cited 2009 April 19]. Available from: http://catalogo.rodelab.com/Whatman/07_Preparacion.pdf.
   Google Scholar