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Letters to the Editor

Ligand-based pharmacophore mapping and virtual screening for identification of potential discoidin domain receptor 1 inhibitors

, , &
Pages 2800-2808 | Received 27 Apr 2019, Accepted 27 Jun 2019, Published online: 08 Aug 2019
 

Abstract

Abbreviations
ADME=

absorption, distribution, metabolism, and excretion

MMGB/SA=

molecular mechanics generalized born surface area

IFD=

induced fit docking

RTK=

receptor tyrosine kinase

NSCLC=

non-small-cell lung cancer

ATP=

adenosine triphosphate

OPLS=

optimized potential for liquid stimulation

RMSD=

root mean square deviation

HTVS=

high-throughput virtual screening

SP=

standard precision

XP=

extra precision

OPLS-AA=

optimized potential for liquid stimulation-all atom

MD=

molecular simulation

MME=

molecular mechanics energies

SGB=

surface generalized born

POPC membrane=

1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine membrane

PDB=

Protein Data Bank

DDR1=

discoidin domain receptor 1

DDR2=

discoidin domain receptor 2

DDRs=

discoidin domain receptors

ECM=

extracellular matrix

TIP4P=

transferable intermolecular potential 4 point

NPT=

constant particle number, pressure and temperature

RMSF=

root mean square fluctuation

Communicated by Ramaswamy H. Sarma

Acknowledgement

We acknowledge the DST-SERB grant sanctioned No:F. EEQ/2018/001057 and RUSA-Phase 2.0 grant sanctioned No:F.24-51/2014-U, Policy (TNmulti-Gen), Dept. of Edn, Govt. of India, Dt.09.10.2018. We thank Prabhu D for his technical assistance.

Disclosure statement

No potential conflict of interest was reported by the authors.

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