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Research Articles

Design potential selective inhibitors for human leukocyte common antigen-related (PTP-LAR) with fragment replace approach

ORCID Icon, , , , , , , & show all
Pages 5338-5348 | Received 07 Nov 2019, Accepted 25 Nov 2019, Published online: 09 Dec 2019
 

Abstract

The overexpression of PTP-LAR could cause the insulin resistance, so PTP-LAR might be a promising target for treating diabetes. In this study, we applied the computer modeling methods with fragment replace approach to screen the fragment database by targeting PTP domain and site B with the aim to discover potent and selective PTP-LAR inhibitors. A series of novel 4-thiazolidone derivatives were gained. The results of their ADMET predictions indicated that these new compounds might become drug candidates. The series of these derivatives were synthesized. Subsequently, their PTP-LAR inhibitory activities were assayed. The compound7d showed highly selectivity for PTP-LAR (10.41 μM) over its close homolog PTP1B (IC50=44.40 μM), SHP2 (IC50>122.81 μM) and CDC25B (IC50>122.81 μM) and docking and molecular dynamics simulation were applied to propose the most likely binding mode of compound7d with PTP-LAR. Thus, our findings reported here may pave a way for discovering potential selective PTP-LAR inhibitors.

Abbreviations
PTP-LAR=

Human leukocyte common antigen-related

PTP=

Protein Tyrosine Phosphatase

IR=

insulin receptor

PTP1B=

Protein tyrosine phosphatase-1B

LRP=

Lung resistance protein

ADMET=

absorption, distribution, metabolism, excretion, toxicity

PPB=

plasma protein binding

BBB=

blood brain barrier penetration

CYP450=

cytochrome P450

HIA=

human intestinal absorption

TLC=

thin-layer chromatography

UV=

Ultra Violet

NMR=

nuclear magnetic resonance

TMS=

tetramethylsilane

MS=

mass spectrometry

ANM=

anisotropic network mode

PDB=

Protein Data Bank

DMF=

N,N-Dimethylformamide

pNPP=

para-nitrophenyl phosphate

DTT=

dithiothreitol

MD=

molecular dynamic

RMSD=

root-mean-square deviation

RMSF=

root-mean-square fluctuation

SPC=

single-point charge

PME=

Particle Mesh Ewald

MM-PBSA=

molecular mechanics Poisson Boltzmann surface area

H bond=

, hydrogen bond

VDW=

Van der Waals

Communicated by Ramaswamy H. Sarma

Disclosure statement

There is no conflict of interest.

Additional information

Funding

This study was supported by the National Natural Science Foundation of China (Grant No. 81773569), the Natural Science Foundation of Tianjin (Grant No. 18JCQNJC13700), the Cooperation and Exchange Project of the National Natural Science Foundation of China (Grant No.81611130090), the Science & Technology Development Fund of Tianjin Education Commission for Higher Education (Grant No. 2017KJ229).

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