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Cloning and expression analysis of a novel tissue-specific dopa decarboxylase mRNA splicing variant in Bombyx mori

, &
Pages 555-557 | Received 13 Sep 2016, Accepted 31 Oct 2016, Published online: 21 Nov 2016

Abstract

Dopa decarboxylase (DDC) protein is involved in the synthesis of dopamine and serotonin. Here, we show that in the silkworm Bombyx mori, a novel DDC splicing variant is selectively expressed in the brain and subesophageal ganglia. In Drosophila melanogaster, a neuron-specific isoform of DDC is known to be alternatively spliced in a similar manner.

Monoamines act as neurotransmitters and neuromodulators in the nervous systems of invertebrates and vertebrates. In Drosophila melanogaster, monoamines regulate various physiological processes, such as feeding, memory, and sexual behavior.Citation1) Dopamine, a monoamine, is converted from L-3,4-dihydroxyphenylalanine by dopa decarboxylase (DDC). DDC also synthesizes serotonin from 5-hydroxy-L-tryptophan.Citation2) In Bombyx mori, elevation in the dopamine level in the brain–subesophageal ganglia stimulates diapause hormone mRNA expression.Citation3,4) In the insect epidermis, DDC synthesizes dopamine as a reaction intermediate involved in cuticular sclerotization.Citation5–7)

In D. melanogaster, different DDC mRNAs are detected in the epidermis and central nervous system (CNS).Citation8) Tissue-specific DDC mRNAs are generated by alternative splicing from a primary transcript of the DDC gene in Drosophila. The epidermal DDC mRNA contains three exons, whereas the CNS DDC mRNA contains four exons, including an additional exon (Fig. ). The additional exon of CNS mRNA is predicted to add 33–35 amino acids to the N-terminus of the epidermal DDC protein.Citation9) In B. mori, the DDC gene is expressed in the epidermis, testis, ovary, silk gland, midgut, and fat body. The epidermal DDC mRNA contains seven exons and encodes a DDC protein comprising 478 amino acid residues.Citation10) Nevertheless, the structure of the 5′-untranslated region (5′-UTR) remains unknown. Moreover, DDC splicing variants of B. mori CNS have not been reported.

Fig. 1. Structures of the dopa decarboxylase (DDC) alternative splicing isoforms of D. melanogasterCitation9) and B. mori (this study).

Note: These isoforms are produced by alternative splicing from the same DDC primary transcript. In both species, the neuronal isoform retains the additional exon.
Fig. 1. Structures of the dopa decarboxylase (DDC) alternative splicing isoforms of D. melanogasterCitation9) and B. mori (this study).

Fig. 2. Sequences of exons A and B of the silkworm (B. mori) DDCv cDNA.

Note: Exon A is common to DDC and DDCv mRNAs. The character background color of exon B is set to gray. Exon B of dopa decarboxylase variant (DDCv) mRNA includes the predicted initiation codon. Exon C contains the putative initiation codon of DDC mRNA.
Fig. 2. Sequences of exons A and B of the silkworm (B. mori) DDCv cDNA.

Fig. 3. Tissue-specific expression analysis of dopa decarboxylase variant (DDCv) RNA by quantitative reverse transcription polymerase chain reaction (qRT-PCR) in larvae.

Note: Total RNA is isolated from the brain (Br), suboesophageal ganglion (SG), testis (Te), ovary (Ov), epidermis (Ep), and fat (FB) of fifth instars larvae (day 3). The relative expression levels are calculated by normalizing against rp49 as an internal reference gene. Data are represented as relative values, with the expression level of DDCv mRNA in larval SG set to 1. Each data point represents mean ± standard error (SE) (n = 6).
Fig. 3. Tissue-specific expression analysis of dopa decarboxylase variant (DDCv) RNA by quantitative reverse transcription polymerase chain reaction (qRT-PCR) in larvae.

To analyze the 5′-UTR structure of the B. mori DDC mRNA and to facilitate the discovery of a novel DDC splicing variant, a complementary DNA (cDNA) library was prepared from the total RNA isolated from the CNS of B. mori larvae. The 5′-end sequences of DDC mRNAs (5′-DDC) were determined by 5′ rapid amplification of cDNA ends (RACE). We obtained two 5′-DDC species: a novel DDC splicing variant (DDCv) and the DDC mRNA reported by the preceding study.Citation10) The full length of DDCv cDNA was obtained by use of primers designed in exon B and exon H (Fig. ). We identified exon A as the 5′-UTR of DDC mRNA and DDCv mRNA. A previous study reported that DDC mRNA consists of seven exons, namely exon A, C, D, E, F, G, and H.Citation10) Moreover, we clarified that DDCv mRNA consists of eight exons, namely exon A, B, C, D, E, F, G, and H. The predicted initiation codon of DDC mRNA was located in exon C. In contrast, the potential initiation codon of DDCv mRNA was located in exon B, and DDCv mRNA is predicted to encode 490 amino acid residues (Fig. ). Although these N-terminal sequences of the fly and silkworm neuronal DDC isoforms show weak similarity, conserved putative motif could not be found in these sequences.

To investigate tissue-specific expression of the DDCv mRNA, we performed quantitative reverse transcription polymerase chain reaction (qRT-PCR). qRT-PCR analyses showed that DDCv mRNA is highly detected in the brain and SG, but hardly in the other tissues (Fig. ). In particular, the expressional level of DDCv mRNA in the SG was approximately fivefold higher than that in the brain (Fig. ). The expression level of DDC mRNA could not be analysed by qRT-PCR because it is difficult to design primers that selectively amplify the DDC isoform. By RT-PCR and agarose gel electrophoresis, we confirmed that DDC mRNA is expressed in all tissues shown in Fig. (data not shown).

DDCv mRNA was highly expressed in the SG, supporting a report that showed that DDC was detected in only four cells of the SG by in situ hybridization.Citation10) DDCv mRNA was detected in the brain by RT-PCR in the present study, whereas DDC mRNA was not detectable in the brain by in situ hybridization.Citation10) The expression level of DDCv mRNA in the brain might be insufficient for detection by in situ hybridization. Dopamine elevates the level of mRNA for the diapause hormone in Br and SG of the silkworm.Citation3) We reared silkworm larvae of commercial strain under a condition to lay a diapause eggs. Selective expression of DDCv mRNA in the brain and SG suggests that DDCv protein may induce embryonic diapause. In both B. mori and D. melanogaster, alternatively spliced neuronal mRNAs retained additional exons that may encode the short amino acid sequence to the hypodermal DDC proteins. Although the physiological roles of the additional exons remain unclear, the evolutionarily conserved mechanism may reflect important regulations of DDC expressions or functions.

Supplemental material

The supplemental material for this paper is available at http://dx.doi.org/10.1080/09168451.2016.1258987.

Disclosure statement

No potential conflict of interest was reported by the authors.

Supplemental material

TBBB_1258987_Supplementary_Material.docx

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