A binary QSAR model for classifying neuraminidase inhibitors of influenza A viruses (H1N1) using the combined minimum redundancy maximum relevancy criterion with the sparse support vector machine

ABSTRACT

Quantitative structure–activity relationship (QSAR) classification modelling with descriptor selection has become increasingly important because of the existence of large datasets in terms of either the number of compounds or the number of descriptors. Descriptor selection can improve the accuracy of QSAR classification studies and reduce their computation complexity by removing the irrelevant and redundant descriptors. In this paper, a two-stage classification approach is proposed by combining the minimum redundancy maximum relevancy criterion with the sparse support vector machine. The experimental results of classifying the neuraminidase inhibitors of influenza A (H1N1) viruses show that the proposed method is able to effectively outperform other sparse alternatives methods in terms of classification performance and the number of selected descriptors.

KEYWORDS:

• Sparse support vector machine
• lasso
• minimum redundancy maximum relevancy
• descriptor selection
• influenza A viruses

Supplementary material

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