Immune responses after live attenuated influenza vaccination

ABSTRACT

Since 2003 (US) and 2012 (Europe) the live attenuated influenza vaccine (LAIV) has been used as an alternative to the traditional inactivated influenza vaccines (IIV). The immune responses elicted by LAIV mimic natural infection and have been found to provide broader clinical protection in children compared to the IIVs. However, our knowledge of the detailed immunological mechanisims induced by LAIV remain to be fully elucidated, and despite 14 years on the global market, there exists no correlate of protection. Recently, matters are further complicated by differing efficacy data from the US and Europe which are not understood. Better understanding of the immune responses after LAIV may aid in achieving the ultimate goal of a future “universal influenza vaccine”. In this review we aim to cover the current understanding of the immune responses induced after LAIV.

KEYWORDS:

• Antibody
• immune response
• live attenuated influenza vaccine (LAIV)
• T-cell

Introduction

Influenza viruses are a major cause of severe respiratory illness, and annually causes global fatality rates of 250,000–500,000 people, with an estimated 3–5 million hospitalizations.^1-3 These numbers are extrapolated from US estimates into the global population of influenza serious airway respiratory infection (SARI), and are probably a major underestimate of the burden of disease. In the US alone, the annual economic costs of influenza are estimated to $8 billion.⁴ Pandemics cause a large burden on society and healthcare systems, often with higher morbidity and mortality rates in younger individuals, inducing a short-term global health emergency. However, seasonal influenza is an annual challenge with a far greater public heath impact than pandemics over time.

Complications of influenza are commonly pulmonary including: bronchitis, viral pneumonitis, secondary bacterial pneumonia and acute respiratory distress syndrome (ARDS), with a high risk of fatal outcome,⁵ particularly during pregnancy.⁶ In children, otitis media, febrile seizures and rare cases of viral myocarditis and meningoencephalitis can occur.^7-9

Despite their shortcomings, vaccines have been the most important and cost-effective counter-measure to combat influenza, since their implementation 70 years ago.¹⁰ Influenza viruses have a unique ability to mutate and hence escape immune defense mechanisms, necessitating annual vaccine updates. These vaccines are the inactivated influenza vaccines (IIV) and live attenuated influenza vaccines (LAIV). The current influenza vaccines are well tolerated and considered safe, with more than 140–170 million doses distributed annually in the US during the last 5 years.⁶ LAIV is administered intranasally and vaccination resembles a natural infection.

Natural influenza infection elicits a broad immune response; involving both the humoral and cellular immune compartments with long-term cellular cross-reactive protection to similar strains achieved. This was evident during the 2009 pandemic when elderly people with prior exposure to the H1N1 virus experienced lower infection rates. The current IIVs provide strain-specific antibody mediated protection, which is shorter-lived. Long-term cellular protective responses are not elicited. The LAIV attempts to mimic a natural infection and has been found to elicit protective antibodies both locally and systemically, as well as induce cellular responses. Knowledge of the early mucosal and long-term immunological responses elicited by seasonal LAIV is limited. Currently, there is a substantial global research effort in further understanding influenza immunology towards the desired goal of a “universal influenza vaccine”, a broadly protective vaccine that does not require annual vaccination. This review aims to cover the latest knowledge regarding human immune responses after LAIV.

Influenza ecology

Influenza is an RNA virus, lacking accurate proof reading mechanisms. This causes point mutations in the viral genome resulting in “antigenic drift”, allowing the virus to escape the host´s acquired immunity. Antigenic drift is responsible for annual epidemics, which necessitates biannual vaccine updates for the northern and southern hemisphere by the World Health Organization (WHO). There are four types of influenza virus (A, B, C and D) where types B and C are predominantly human viruses, although C rarely cause infections. Types A and B are responsible for seasonal epidemics. Influenza A viruses infect >20 different animal species, mainly pigs, birds (poultry and waterfowl) and bats, representing a considerable zoonotic potential, which can cause pandemics if the viruses acquire the ability for human-to-human transmission.^11,12 Pigs can be infected by avian, swine and human viruses and may act as “mixing vessels”, creating novel human influenza strains.¹³ Most influenza A subtypes (combinations of H1-16/N1-9) are found in aquatic birds, resulting in global viral dissemination,¹² whilst the remaining subtypes (H17/H18 and N10/N11) occurs in bats.

Seasonal influenza vaccines

The currently used seasonal influenza vaccines (IIV and LAIV) are usually trivalent, consisting of two influenza A subtypes and one B lineage. However, due to the two co-circulating influenza B lineages, B/Yamagata and B/Victoria, quadrivalent vaccines containing both influenza B lineages are available.¹⁴ Since 1945 influenza vaccines have been produced in embryonated hen´s eggs, and even today this remains the most important production platform. Approximately 10 LAIV doses are produced from one embryonated egg, compared to a single IIV dose.¹⁵ Egg supply and vaccine yield achieved from each egg, are the most important factors limiting influenza vaccine production. Production takes roughly six months¹⁶ and during this time a new strain can arise, leading to a mismatch between the vaccine and circulating strain. Production of quadrivalent vaccines is an improvement, reducing the risk of mismatch of B strains.¹⁷

LAIV vaccine strains are produced by reverse genetics, using the HA and NA genes from the WHO recommended strains with six gene segments from a cold adapted, temperature sensitive and attenuated master donor virus (MDV).¹⁸ LAIV viruses are restricted in replication to the lower temperatures of the upper airways (33°C) (Figure 1), but cannot replicate in the warmer, lower respiratory tract (>33°C).¹⁸

Figure 1. A suggested working model of how live attenuated influenza vaccine (LAIV) elicits immune response. The numbers in the figure refer to 1. adminstration of the LAIV intranasally as a nasal spray; 2. Limited virus replication (IFN-γ) by LAIV; 3. Viral influenza antigen is transported to the tonsils by dendritic cells (DCs); 4. Activation and proliferation of T cells (IL-2); 5. Activation and proliferation of B cells, affinity maturation and isotype switching; 6. Activated B and T cells homes to site of infection (vaccination); 7. Plasma cells secrete specific mucosal antibodies and 8. Plasma cells secrete specific antibodies into circulation. Adapted from.⁹¹

Influenza vaccination strategies

Although fatal cases of influenza occur in the elderly, children are the main transmitters of disease in the community, and most often hospitalized during outbreaks; often without influenza as suspected diagnosis.^9,19 Seasonal influenza vaccination strategies vary between countries. In the US, influenza vaccination is recommended for all people >6 months, whereas in Europe vaccination is largely recommended for risk groups, and with a few exceptions not children in general.^7,20-23

A European consensus report from 2006 recommended children <3 years old to be considered a high-risk population and recommended for vaccination.²⁴ LAIV is recommended for children due to the lower immunogenicity of IIV in this age group and the needle-free administration. The UK introduced seasonal LAIV into their childhood vaccination program (4–11 years old) in 2013 and has estimated large national cost savings by vaccinating children with a reduction in morbidity due to herd immunity.^21,25 Finland, Latvia, Slovenia and Germany are the only other European countries to recommend seasonal vaccination of healthy children in this age group.²³

Risk groups and recommendations for influenza vaccination

A higher risk of increased morbidity and mortality after influenza virus infection has been consistently observed in young children (<5 years), elderly (>65 years), pregnant women,^3,6,26 morbid obesity (Body mass index (BMI)>40)²⁷ and people of all ages with chronic conditions such as: pulmonary or cardiac diseases, immunosuppression (by either medication or disease), diabetes, metabolic, liver, kidney and neurological/neuromuscular disorders.^6,28

The WHO has published guidelines for the recommendation of seasonal influenza vaccines to the population at most risk of severe or fatal disease (Table 1).⁶ Each country makes national decisions about prioritisation based upon costs and feasibility of vaccination.

Table 1. A comparison of the immune responses after natural infection, and immunisation with inactivated influenza vaccine (IIV) or live attenuated influenza vaccine (LAIV).

Immune response	Natural infection	IIV	LAIV
Serum Ab response (HI)	++	+++	+
Antibody secreting cells	++	++	+
Memory B cells	++	+	++
Nasal IgA	++	−/+	+++
CD4 T-cells	++	++	+++
CD8 T-cells	++	−	+
Cross protective immunity	+++	−/+	++

Table 1 is adaped from.¹⁰

Live attenuated influenza vaccine (LAIV)

The Russians were the first to use a LAIV and have used it for over 40 years.²⁹ LAIV was licensed in the US for healthy people aged 2–49 years old in 2003, and in Europe in 2012, for healthy children 2–17 years old.³⁰ LAIV is administered as a nasal spray with one spray per nostril, and requires replication of the live attenuated virus in the mucosa of the upper airways to induce protection. By mimicking natural infection, but without causing disease or onward transmission, LAIV elicits both humoral and cellular immune responses (Figure 1).^31,32 LAIV induces mucosal IgA antibodies, which provide protection at the site of viral entry against subsequent infection (Figure 1).^33-35 LAIV has shown better immunogenicity than IIV in children,³⁶ and only LAIV has been shown to induce T-cell responses in children, perhaps due to pre-existing immunity limiting infection of LAIV strains in adults.^31,37,38

Vaccine safety

Vaccines are given prophylactically to a healthy population including children. The tolerance of side effects is hence very low, and safety is of the utmost importance. LAIV strains are safe, genetically stable, and do not revert to wild type viruses.³⁹ There is the possibility that LAIV can reassort with wild type viruses if simultaneous infection and immunization occurs, however the progeny virus are unlikely to transmit as they maintain the attenuated phenotype of the LAIV.⁴⁰ LAIV is easy to administer and well tolerated with mostly transient, local side effects observed 2–3 days after vaccination, such as runny or congested nose.^32,41,42 An increased hospitalization rate due to wheezing was found in children <2 years old and, LAIV is therefore contraindicated in these children.³⁶ LAIV is also contraindicated in immunocompromised individuals, pregnant women and in children with severe asthma, or who are receiving salicylate therapy (risk of Reye´s syndrome with salicylate and wild-type influenza infection). Several studies have confirmed LAIV to be safe in children with intermittent wheezing and stable asthma, including children 18 months old.^32,43 A recent multicentre study of the safety of LAIV in children (2–18 years) with egg allergy and asthma, found that the vaccine was well tolerated with a low risk of systemic allergic reactions.^13,44

Measuring protection after LAIV

Vaccine effectiveness and correlates of protection

LAIV has a proven record of efficacy after decades of use (reviewed in⁴⁵), Cochrane reviews have found approximately 80% efficacy in young children (<6 years old) and 40% in adults to matched strains.^46,47 The efficacy varies depending on the outcome measure and the method used, but is higher in children than adults and in vaccinees that experience influenza symptoms and have virological confirmed influenza.^48-51 LAIV had superior efficacy compared to IIV in young children (generally 70–90% against strains antigenically similar to the vaccine strains),^52-54 and in recipients with a history of respiratory tract infections, asthma and HIV.^54,55 Also, LAIV recipients with breakthrough influenza had less severe illness.^52,54 A recent review found no evidence of reduced efficacy of LAIV in children who were vaccinated with LAIV for two consecutive seasons.⁵⁶

The commonly used hemagglutination inhibition (HI) assay measures virus specific antibody and an HI titer of ≥40 is considered protective in adults. Although higher HI titers of 110 or 320 for H3N2 could be more appropriate for protection in children.⁵⁷ LAIV efficacy trials (clinical trials measuring the number of influenza like illness (ILI) symptoms with a laboratory confirmed influenza in vaccinees) have shown that the HI titer underestimates protection from LAIV.⁵⁸ This is probably due to the multifaceted immune response elicited by LAIV with induction of local IgA, and T-cell responses, which are not measured by HI. A recent study searching for correlates of protection (COPs) after LAIV could not find a single marker predictive of protection and COPs used for IIV did not correlate with protection after LAIV vaccination and subsequent challenge.⁵⁹ Non-neutralising antibodies may also be important in limiting influenza through natural killer mediated lysis of infected cells through antibody dependent cell-mediated cytotoxicity (ADCC). Although to date, no increases in ADCC activity after LAIV immunization were found in adults or children.⁶⁰

LAIV induces cellular IFN-γ responses, which are not yet an established correlate of protection, however they have been used in several studies with different thresholds (range 20–100 spot forming units (SFU)/million peripheral blood mononuclear cells (PBMCs).^61-63 A large efficacy trial conducted with >2000 children suggested a COP of T-cellular immunity of 100 IFN-γ SFU/million PBMCs, however the suggested number of 100 is considered arbitrary.³⁸ Background levels of <20 SFU/million PBMCs have been found in a UK child cohort,⁶³ and pre-vaccination levels of >100SFU/million PBMCs were found in a Norwegian cohort,⁶⁴ probably due to natural infection. LAIV induces both humoral and cellular immune responses and there is an urgent need for new correlates of protection to evaluate the immunogenicity of LAIV in children, which may aid in development of new vaccines.

The early kinetics of the mucosal immune response

Mucosal antibodies are vital in protecting the upper airways, the site of viral entry, while serum antibodies generally protect the lower respiratory tract. LAIV elicits secretory IgA, which plays a major role in influenza protection being the predominant antibody secreted at the mucosal surfaces (Figure 1).^33,65,66 Early work in seronegative (HI≤8) adults found that an important effect of LAIV was the rapid and durable induction of secretory nasal wash IgA persisting for up to 6–12 months, as well as serum IgG.^33,67,68 Recent work in children using non-invasive sampling of saliva, found significant increases in influenza specific salivary IgA after only 14 days, lasting up to 6 months³² and this could be used as a new possible indicator of vaccine immunogenicity in children.

Nasal IgA has been found to be associated with protection from influenza illness in young children (<3 years old) and adults from experimental influenza challenge.^66,69 A placebo-controlled, double blind study in children, found that both serum and nasal IgA antibodies correlated with LAIV induced protection, but that nasal IgA was the stronger correlate.⁷⁰ Other studies have demonstrated that despite the lack of a robust serum antibody response, the LAIV provides protective immunity.^58,71 The induction of mucosal antibodies may hence be the most important effect of LAIV,^72,73 and could be a superior indicator of immunogenicity of LAIV compared to serum antibodies.¹⁰ The findings of long-term local IgA responses after LAIV indicate that the mucosal immune response is well developed in young children and that the LAIV may provide local protection in the nasal and oral cavities. Furthermore, local, mucosal IgA correlates with HI titers for all vaccine strains.^66,74

Several studies have found that the highest humoral responses were directed towards the influenza B strains in LAIV.^32,66,72 The LAIV influenza B strain induces both antibodies and T-cells, while the A viruses mostly induced T-cells and to a lesser degree antibodies,^66,72 although the reason for this is not clear. It may be due to lack of pre-existing immune responses to the B strain, but it could equally be due to differences in the infectivity of the LAIV strains, or that the B virus may be better adapted to replicate in humans.

Since HI antibodies have proven suboptimal for children or for measuring immunogenicity after LAIV, there is a global interest in finding an early predictor of LAIV immunogenicity. Unlike the HI, there exists no COP for mucosal antibodies,⁷³ due to great variations in quality and quantity and challenges in sampling and assaying of mucosal antibodies.^10,66,69 Given the multifaceted response dependent on age, priming status and comorbidities, perhaps a single COP for LAIV will not be feasible, however a partial COP could be of great value.

The longevity of systemic immune response induced by LAIV

LAIV elicits both early and durable humoral and cellular immune responses in children. Increased numbers of Memory B cells (MBCs) as well as T-cellular responses, which were maintained for 6 months in most children, and up to one year in some children, have been found.^32,33,65

The effect of priming on the subsequent immune response

It is debated whether LAIV is effective in older age groups, probably as pre-existing immunity derived from previous natural infection limits replication of the LAIV viruses. Children's developing immune system, combined with the impact of previous exposures (priming) to influenza may influence the age-related response to LAIV. Age dependent differences are found in the response, supporting immunization of the youngest children with two doses, although most respond after the first dose.

A paediatric study found that naïve children mounted a significant increase in B-cell responses (ASC and MBC) after LAIV. While primed children (HI titre≥40) had higher numbers, of pre-vaccination MBC which did not boost after LAIV, indicating a possible biological threshold for boosting. Memory B cells responses are rapid, producing more high affinity antibodies than naïve B-cells. Serum IgG levels correlate with resistance to infection.⁶⁹ This could imply that repeated vaccination with a LAIV could provide a more cross-reactive immune response towards influenza.

The effect of previous priming on the subsequent LAIV immunological response is unclear. The need for two doses of LAIV in young children is based on the belief that priming is essential. This is supported by a study where antibody titers were higher (although not significantly boosted) post-LAIV in children with pre-existing antibodies, indicating that LAIV perhaps assisted maintenance of the response.³² In naïve children, protective HI titers were reached as early as 14 days post-vaccination indicating a rapid induction of protective antibodies.³⁵ The extended duration of the antibody secreting cell (ASC) response observed after LAIV than IIV, could be due to the local application and virus replication in the mucosa providing a longer stimulation period.⁷⁵

In 2014–15, the US experienced surprisingly and unexpected low efficacy of the H1N1 strain after LAIV but not IIV,^76,77 which led the USA advisory committee on immunization practices (ACIP) to withdraw its earlier preferential recommendation of the LAIV to children.^78,79 The manufacturer stated that the H1N1 strain had a temperature sensitive mutation rendering it heat instable, possibly explaining the lack of protection observed.⁷⁹ The manufacturer has updated the H1N1 strain used in LAIV vaccines from 2016, and future efficacy studies will indicate if this resolves the problem. There is also currently a disparity between LAIV vaccine effectiveness data in the US and Europe. In Europe LAIV has been found to provide moderate protection against H1N1pdm09 in the UK (41.5%) and Finland (47.9%), but remained lower than IIV.^80-82 Similarly, a study from Senegal found that LAIV failed to protect against H1N1pdm09 in young children,⁸³ whereas protection was found in a similar study in Bangladesh.⁸⁴ The reason for these differences is currently unknown, but could be related to the vaccine, the viruses or the population´s exposure history.^85,86 The main difference between the USA and Europe is the vaccine recommendations, with the USA recommending influenza vaccination for everyone > 6 months.

Tonsil responses after LAIV

Tonsils are secondary lymphoid tissue, located at the site of entry of the upper respiratory tract, draining the oral and nasal cavities⁸⁷ and are an important induction site and reservoir for B-and T-cells.^88-90 Since LAIV is administered in the nasal cavity, tonsils may play an important role in inducing immunological responses after LAIV. This is supported by expression of B-and T-cell activation markers in tonsils from children after LAIV.⁹¹ A paediatric study found that LAIV induced early (7–14 days post-vaccination) B-cellular responses (ASC and MBC) in the tonsils.³⁵ MBC levels increased significantly post-vaccination in blood and tonsils in naïve children, while primed children maintained their high levels for up to one year in blood. Primed children had higher local MBCs in the tonsils pre-vaccination, which did not boost after LAIV. Furthermore, MBC levels correlated with systemic antibodies (HI), indicating that responses in the tonsils are reflected in the peripheral blood, which has earlier been observed for ASC numbers after IIV.⁷⁵ Further studies of induction of cell-mediated immunity after LAIV in tonsils are warranted. A recent study found that the nasal-associated lymphoid tissues (NALTs) act as an induction site for the recall and expansion of memory CD8⁺ T-cells after LAIV but did not activate naïve CD8⁺ T-cells, and this raises the question of whether LAIV can generate CD8 T-cells in the tonsils.⁹²

T-cell immune responses after LAIV vaccination

T-cells are critical for the control of viral infections, and may protect from severe illness or fatal outcome. Important human studies have shown that CD4⁺ and CD8⁺ T-cells are important in limiting disease and may confer heterosubtypic immunity.^61-63,93 In a human challenge study, pre-existing CD4⁺ T-cells resulted in less influenza symptoms.⁶¹ During the 2009 pandemic, the presence of CD8⁺ T-cells was associated with less severe influenza illness.⁶² Studies comparing the immune response after LAIV and IIV in children and adults, found that only children mounted a T-cellular response after LAIV.^31,37 In children, a robust T-cell response was found lasting six months and above the proposed protective level of 100 SFU/million PBMCs.^32,38,64 Interestingly, this study found that the few (n = 5) children, who did not respond serologically to the H1N1 strain, had significant increases in virus specific T-cell responses after vaccination.^32,64 This indicates that although these children were non-responders in the humoral compartment, they responded in T-cells, which could provide clinical protection.

The possibility of heterosubtypic protection

Natural infection provides the basis for cross-reactive T-cells, and historical studies provide evidence of hetero-variant protection after influenza infection.^61,94,95 Activation of T-cells by a viral infection is a dynamic and complex immune reaction where T-cells migrate between the blood and tissues.⁹⁶ Current research towards the desired universal influenza vaccine includes focus on T-cells and their potential for cross-protection across different IAVs. As opposed to IIV, the LAIV vaccine mimics natural infection inducing broad T-cellular responses.^31,32,97 Studies have shown that the LAIV provides protection in animals challenged with heterosubtypic influenza strains,^98-100 perhaps through induction of tissue-resident memory T cells (TRM) in the lungs.¹⁰¹ More importantly, human studies have found that children were protected against a drifted H3N2 variant virus, which occurred naturally during clinical studies and was not contained in the vaccine.^31,97 Furthermore, the LAIV has shown the potential to confer broader protection than the IIVs in children when used in school settings.^50,63 The benefits of herd immunity have also been observed after LAIV vaccination of the child population in the UK, and T-cellular immune responses are considered to provide this observed effect.²⁵ A recent study found that LAIV reduced the risk of hospitalization due to influenza illness in young children,⁸⁵ perhaps due to boosting pre-existing T-cells to heterovariant strains not included in the vaccine.⁶⁴ In contrast to IIV, LAIV induces cross-protective CD8+ T-cells in young children, and when a novel pandemic arises, these CD8 T-cells may provide valuable protection.¹⁰² In adults these influenza specific CD8+ T-cells have been shown to be long-lived, and are promising for the development of future influenza vaccines.^64,103 It has been suggested that using the LAIV in children could be an important step in the protection against a new pandemic.¹⁰⁴

Future perspectives

Although advancements have been made, the precise immunological events that ultimately produce long lasting and neutralizing antibodies or cross-reacting T-cells remains unclear. To design better vaccines, it is essential to better understand these complex immune responses induced by natural infection. Future research studying the immune responses after infection and LAIV vaccination will help answer some of these questions. Studying the responses in naïve children may perhaps illustrate an immunological scenario in adults where the population lacks protective antibodies. Studying the responses in primed children could aid in development of improved future seasonal vaccines. The recent licensure of a quadrivalent LAIV is an improvement, protecting from both influenza B lineages. However, some speculation about “competition” between the four LAIV viruses could explain the reported reduced effectiveness against the H1N1pdm09 strain.

The need for annual strain updates, time constraints of production as well as the late arrival of the 2009 pandemic vaccine has further motivated research into developing a “universal influenza vaccine”. Such a vaccine, would ideally afford protection against all influenza strains, a “one shot fix all” approach. The key to such a success lies in identifying conserved epitopes that exist in multiple influenza viruses (including highly conserved HA stalk,¹⁰⁵ or T-cell epitopes¹⁰⁶) followed by developing a vaccine, which elicits a durable effective immune response.¹⁰⁷ Vaccines capable of inducing cross-reactive T-cellular responses would be a major improvement, and such clinical trials are in focus.^10,108 However considerable efforts are needed before any replacement of today's influenza vaccines will occur.¹⁰⁹ In contrast to an earlier study,⁹⁶ we have recently shown that LAIV boosts cross-reactive CD8⁺ T-cells responses.⁶⁴ If LAIV provides protection across influenza A subtypes, this would have large public health implications. Larger studies will be needed to confirm the level of protection, and studies into the differences between US and European LAIV efficacy data are warranted as well.

There are no vaccines today, which are licensed on the basis of limiting severe disease. In the future, such a vaccine could prove valuable in reducing severe illness and the burden on healthcare systems from a novel virus and buy time before a specific vaccine is available.

Disclosure of potential conflicts of interest

No potential conflicts of interest were disclosed.

Acknowledgments

We wish to thank Dr. Karl A Brokstad for valuable scientific input and for providing the illustration in Figure 1.

Additional information

Funding

EU IMI Flucop (IMI115672); EU Univax (601738).