The complete chloroplast genome of Cymbidium dayanum (Orchidaceae)

Abstract

Cymbidium dayanum, a wild orchid species in the Orchid family (Orchidaceae), is considered highly valuable because of its long flowering period and beautiful plant shape. We sequenced the complete chloroplast genome of C. dayanum using the Illumina Hiseq platform (Illumina, San Diego, CA). The size of the C. dayanum chloroplast genome is 155,408 bp, with an average GC content of 36.76%. This chloroplast genome has containing a large single-copy (LSC) region of 84,189 bp, a small single-copy (SSC) region of 17,991 bp, and two inverted (IRa and IRb) repeat regions of two 26,614 bp. A total of 118 unique genes were annotated, including 76 protein-coding genes, 38 tRNA genes, and 4 rRNA genes. A maximum-likelihood phylogenetic tree indicated that C. dayanum is closely related to C. tracyanum in the genus Cymbidium based on 9 whole chloroplast genome sequences.

Keywords:

• Cymbidium dayanum
• chloroplast genome
• phylogenetic analysis

Disclosure statement

No potential conflict of interest was reported by the authors.

Data availability statement

The data that support the findings of this study are openly available in NCBI database at https://www.ncbi.nlm.nih.gov. GenBank Accession no. MW160431, BioProject Accession no. PRJNA718379.

Additional information

Funding

This work was supported by the Guizhou Major Science and Technology Project #1 under Grant [no. 20193001]; Science and Technology Innovation Project of Guizhou Academy of Agricultural Sciences #2 under Grant [no. 201704].