https://orcid.org/0000-0003-1587-2402
Abstract
In this study, we sequenced and analyzed the complete mitochondrial genome (mtgenome) of the hydrozoan jellyfish Turritopsis lata. The mtgenome was a complete linear form (15,047 bp in length, 30.9% A, 42.1% T, 12.5% C, and 14.5% G), including 13 protein coding genes (PCGs) (cox1, cox2, cox3, atp6, atp8, nad1, nad2, nad3, nad4, nad4L, nad5, nad6, and cytb), 2 tRNAs (tRNAMet and tRNATrp), and 2 rRNAs (12S and 16S rRNA). The genome structure of the T. lata was completely identical to those of other species within the subclass Hydroidolina. In addition, our molecular phylogenetic analysis using 13 PCGs within hydrozoans showed that T. lata was the closest to Turritopsis dohrnii.
The hydrozoan jellyfish Turritopsis are well-known to revert their life cycle to the juvenile polyp stage from adult medusae by rejuvaniation, and, thus, they are called ‘immortal jellyfish’ (Hasegawa et al. Citation2016). The jellyfishes are recorded worldwide from tropical to temperate waters (Miglietta et al. Citation2007), and their distribution patterns are region-specific depending on species (Miglietta et al. Citation2019). Although they are classified by morphology, their identification is difficult due to similar morphology among relatives (Kubota Citation2015). Alternatively, molecular analysis has been considered as a powerful tool to determine their taxonomic identities (Li et al. Citation2018), and mitochondrial genes and genomes are commonly used as molecular markers of taxonomy (Yuan et al. Citation2016; Hashemi-Aghdam et al. Citation2017). To date, six Turritopsis species have been recorded in the public database (WoRMS Citation2021); of them, a mtgenome sequence was revealed only in Turritopsis dohrnii (KT020766). Additional molecular data are required for more accurate phylogenetic analysis of their taxa (Miglietta et al. Citation2007). In the present study, we report the mtgenome sequence and structure of Turritopsis lata Lendenfeld, 1885 (Cnidaria; Hydrozoa) with description of phylogenetic relationships within hydrozoans.
The Turritopsis lata specimen was collected from Tando Bay (34°58′56.4"N, 126°19′47.6"E), South Korea, on 1 September 2015. Total genomic DNA (gDNA) was extracted from the whole tissue using the modified cetyl-trimethylammonium bromide (CTAB) method (Richards et al. Citation2003). The remaining parts of the specimen and gDNA were stored in the specimen room of Department of Biotechnology (Dr. Hansol Kim, [email protected]), Sangmyung University, Korea, under the voucher number RH32. The complete mtgenome was sequenced on MGISEQ-200 platforms, and paired end reads of mtgenome sequences were assembled and annotated using GetOrganelle v1.7.1a (Jin et al. Citation2020), Geneious 9.1.3 (Geneious, Auckland, New Zealand), and MITOS (Bernt et al. Citation2013), respectively. A maximum-likelihood (ML) tree (JTT matrix-based model; 1000 bootstrap replication) was generated based on concatenated amino acid sequences of 13 PCGs in MEGA X (Kumar et al. Citation2018).
The complete mtgenome of T. lata (GenBank accession no. MW399220) was linear in shape and 15,047 bp in length with 73% AT content. The genome contained 13 PCGs (cox1, cox2, cox3, atp6, atp8, nad1, nad2, nad3, nad4, nad4L, nad5, nad6, and cytb), two rRNAs (12S and 16S rRNA), and two tRNAs (tRNAMet and tRNATrp). The arrangement of 17 mitochondrial genes of T. lata was completely identical to another order Anthoathecata species, including T. dohrnii (KT020766), Clava multicornis (JN700935) and Hydra oligactis (EU237491) (Seo et al. Citation2020). Mitochondrial PCGs of T. lata have two start codons (ATG/GTG) and three stop codons (TAA/TAG/incomplete T). Especially, the incomplete T stop codon was found only in cox1.
The phylogenetic relationship within hydrozoans was inferred using amino acid sequences of 13 PCGs (). The ML tree showed that the T. lata formed a sister relationship with T. dohrnii. In the present study, we provide additional complete mtgenome sequence data of T. lata to understand the abstruse phylogenetic relationship of hydrozoans.
Figure 1. Molecular phylogenetic relationship of Hydrozoa. Two scyphozoans (Nemopilema nomurai and Aurelia coerulea) were included as the out-group. The maximum-likelihood (ML) phylogeny tree (JTT matrix-based model) was generated with the concatenated amino acid sequences of 13 mitochondrial PCGs. The percentage of replication value of bootstrap test (1000 replications) are shown above the branches. A black dot represents Turritopsis lata determined in this study.
Disclosure statement
No potential conflict of interest was reported by the author(s).
Data availability statement
The genome sequence data that support the findings of this study are openly available in GenBank of NCBI at https://www.ncbi.nlm.nih.gov under the Accession no. MW399220.
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References
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