The complete chloroplast genome of Rubus pinfaensis, an edible and medicinal dual-purpose plant

Abstract

Rubus pinfaensis H. Lév. & Vaniot is of great importance in the phylogeny and evolution amongst Rosaceae, genus Rubus L. plants. The chloroplast genome of R. pinfaensis was reported in this study, which is 155,523 bp in size, with an average GC content of 37.13%. The complete chloroplast genome has a typical quadripartite structure, including a large single copy (LSC) region (85,211 bp) and a small single copy (SSC) region (18,718 bp), which were separated a pair of inverted repeats (IRs, 25,797 bp). This plastome contained 129 different genes (112 unique), including 85 protein-coding genes (79 unique), 36 tRNA genes (29 unique), and 8 rRNA genes (4 unique). The chloroplast genome of R. pinfaensis has completed that will be based on the phylogeny and genomic studies in the family Rosaceae, genus Rubus L.

Keywords:

• Rubus pinfaensis
• chloroplast genome sequence
• Rosaceae
• phylogeny

Disclosure statement

No potential conflict of interest was reported by the author(s).

Data availability statement (DAS)

The complete chloroplast genome generated for this study has been deposited in GenBank with accession number MZ352081, which is openly available in GenBank of NCBI at website (https://www.ncbi.nlm.nih.gov/). All high-throughput sequencing data files are available from the GenBank Sequence Read Archive (SRA) accession number: SRR14757448. The associated BioProject and Bio-Sample numbers are PRJNA735803 and SAMN19602744 respectively.

Additional information

Funding

This work was financially supported by the Scientific Research Fund Project of Yunnan Provincial Department of Education [2019J0137] and the Yunnan Province High-level Talents plan Young & Elite Talents Projiect [YNWR-QNBJ-2019-130].