TGIF1 is a Potential Candidate Gene for High Myopia in Ethnic Kashmiri Population

Abstract

Purpose: High myopia is a complex disorder that imposes serious consequences on ocular health. Linkage analysis has identified several genetic loci with a series of potential candidate genes that reveal an ambiguous pattern of association with high myopia due to population heterogeneity. We have accordingly chosen to examine the prospect of association of one such gene [transforming growth β-induced factor 1 (TGIF1)] in population that is purely ethnic (Kashmiri) and represents a homogeneous cohort from Northern India.

Methods: Cases with high myopia with a spherical equivalent of ≥−6 diopters (D) and emmetropic controls with spherical equivalent within ±0.5 D in one or both eyes represented by a sample size of 212 ethnic Kashmiri subjects and 239 matched controls. Genomic DNA was genotyped for sequence variations in TGIF1 gene and allele frequencies tested for Hardy–Weinberg disequilibrium. Potential association was evaluated using χ² or Fisher’s exact test.

Results: Two previously reported missense variations C > T, rs4468717 (first base of codon 143) changing proline to serine and rs2229333 (second base of codon 143) changing proline to leucine were identified in exon 10 of TGIF1. Both variations exhibited possibly significant (p < 0.05) association with the disease phenotype. Since the variant allele frequency of both the single-nucleotide polymorphisms in cases is higher than controls with odds ratio greater than 1.Therefore, variant allele of both the single-nucleotide polymorphisms represents the possible risk factor for myopia in the Kashmiri population. In silico predictions show that substitutions are likely to have an impact on the structure and functional properties of the protein, making it imperative to understand their functional consequences in relation to high myopia.

Conclusions: TGIF1 is a relevant candidate gene with potential to contribute in the genesis of high myopia.

• Close work
• eye
• genetics
• high myopia
• refractive error
• sclera
• single-nucleotide polymorphism
• transforming growth β-induced factor 1

Author’s Contributions

S.R. and I.A. formulated and performed all the lab work. T.Q. provided all the samples. T.J. and N.A.N. performed statistical analysis. K.I.A. designed the work, edited the article, coordinated the group and overall invigilator of the study. All authors have read and approved the article.