Selection of suitable reference genes from bone cells in large gradient high magnetic field based on GeNorm algorithm

Abstract

Studies of animals and humans subjected to spaceflight demonstrate that weightlessness negatively affects the mass and mechanical properties of bone tissue. Bone cells could sense and respond to the gravity unloading, and genes sensitive to gravity change were considered to play a critical role in the mechanotransduction of bone cells. To evaluate the fold-change of gene expression, appropriate reference genes should be identified because there is no housekeeping gene having stable expression in all experimental conditions. Consequently, expression stability of ten candidate housekeeping genes were examined in osteoblast-like MC3T3-E1, osteocyte-like MLO-Y4, and preosteoclast-like FLG29.1 cells under different apparent gravities (μg, 1 g, and 2 g) in the high-intensity gradient magnetic field produced by a superconducting magnet. The results showed that the relative expression of these ten candidate housekeeping genes was different in different bone cells; Moreover, the most suitable reference genes of the same cells in altered gravity conditions were also different from that in strong magnetic field. It demonstrated the importance of selecting suitable reference genes in experimental set-ups. Furthermore, it provides an alternative choice to the traditionally accepted housekeeping genes used so far about studies of gravitational biology and magneto biology.

Keywords::

• Magnetic field
• Gravity
• Reference gene
• GeNorm
• Bone cells

Acknowledgements

This project was supported by the National Basic Research Program of China (2011CB710903) and the National Natural Science Foundation of China (31071043), the Fundamental Research Foundation of Northwestern Polytechnical Univeristy (JC201056), and the Doctorate Foundation of Northwestern Polytechnical University (CX201022).

Declaration of interest

The authors report no conflicts of interest. The authors alone are responsible for the content and writing of the article.