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Analytical Letters Volume 42, 2009 - Issue 1
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SENSORS

Efficient Design Strategy for Whole-Cell and Cell-Free Biosensors based on Engineered Riboswitches

Norihito Muranaka Department of Biomedical Engineering, University of California at Davis, Davis, California, USA
,
Vandana Sharma Department of Biomedical Engineering, University of California at Davis, Davis, California, USA
,
Yoko Nomura Department of Biomedical Engineering, University of California at Davis, Davis, California, USA
&
Yohei Yokobayashi Department of Biomedical Engineering, University of California at Davis, Davis, California, USACorrespondence[email protected]
Pages 108-122 | Received 16 Sep 2008, Accepted 18 Sep 2008, Published online: 21 Jan 2009

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Yaroslav Chushak, Svetlana Harbaugh, Kathryn Zimlich, Bryan Alfred, Jorge Chávez & Nancy Kelley-Loughnane. (2021) Characterization of synthetic riboswitch in cell-free protein expression systems. RNA Biology 18:11, pages 1727-1738.
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Norihito Muranaka, Vandana Sharma & Yohei Yokobayashi. (2011) Enzymatic Probing Analysis of an Engineered Riboswitch Reveals Multiple off Conformations. Nucleosides, Nucleotides & Nucleic Acids 30:9, pages 696-705.
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Articles from other publishers (23)

Hyun Gyu Hwang, Dae-Yeol Ye & Gyoo Yeol Jung. (2023) Biosensor-guided discovery and engineering of metabolic enzymes. Biotechnology Advances 69, pages 108251.
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Yifan Wu, Longjiao Zhu, Yangzi Zhang & Wentao Xu. (2023) Multidimensional Applications and Challenges of Riboswitches in Biosensing and Biotherapy. Small.
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Yifan Wu, Longjiao Zhu, Shuting Li, Huashuo Chu, Xinxin Wang & Wentao Xu. (2023) High content design of riboswitch biosensors: All-around rational module-by-module design. Biosensors and Bioelectronics 220, pages 114887.
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Takeshi Tabuchi & Yohei Yokobayashi. (2021) Cell-free riboswitches. RSC Chemical Biology 2:5, pages 1430-1440.
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Priyanka Patel Vatsa, Manju Shri, Poonam Bhargava, Chaitanya G. Joshi & Madhvi Joshi. 2020. Engineering of Microbial Biosynthetic Pathways. Engineering of Microbial Biosynthetic Pathways 111 132 .
Yaokang Wu, Guocheng Du, Jian Chen & Long Liu. 2020. Engineering of Microbial Biosynthetic Pathways. Engineering of Microbial Biosynthetic Pathways 53 73 .
Alexander Carpenter, Ian Paulsen & Thomas Williams. (2018) Blueprints for Biosensors: Design, Limitations, and Applications. Genes 9:8, pages 375.
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Svetlana V. Harbaugh, Jennifer A. Martin, Jenna Weinstein, Grant Ingram & Nancy Kelley-Loughnane. (2018) Screening and selection of artificial riboswitches. Methods 143, pages 77-89.
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Atsushi Ogawa. 2018. Applied RNA Bioscience. Applied RNA Bioscience 79 93 .
Atsushi Ogawa, Yuta Murashige, Junichiro Tabuchi & Taiki Omatsu. (2017) Ligand-responsive upregulation of 3′ CITE-mediated translation in a wheat germ cell-free expression system. Molecular BioSystems 13:2, pages 314-319.
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Elnaz Mehdizadeh Aghdam, Mohammad Saeid Hejazi & Abolfazl Barzegar. (2016) Riboswitches: From living biosensors to novel targets of antibiotics. Gene 592:2, pages 244-259.
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Atsushi Ogawa & Yasunori Doi. (2015) Investigation of end processing and degradation of premature tRNAs and their application to stabilization of in vitro transcripts in wheat germ extract. Organic & Biomolecular Chemistry 13:4, pages 1008-1012.
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Atsushi Ogawa. 2015. Riboswitches as Targets and Tools. Riboswitches as Targets and Tools 109 128 .
Atsushi Ogawa. (2013) Ligand-Dependent Upregulation of Ribosomal Shunting. ChemBioChem 14:13, pages 1539-1543.
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Miso Park, Shen-Long Tsai & Wilfred Chen. (2013) Microbial Biosensors: Engineered Microorganisms as the Sensing Machinery. Sensors 13:5, pages 5777-5795.
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Wei Huang, Joohyun Kim, Shantenu Jha & Fareed Aboul-ela. (2012) Conformational Heterogeneity of the SAM-I Riboswitch Transcriptional ON State: A Chaperone-Like Role for S-Adenosyl Methionine. Journal of Molecular Biology 418:5, pages 331-349.
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Joseph A. Gredell, Christopher S. Frei & Patrick C. Cirino. (2012) Protein and RNA engineering to customize microbial molecular reporting. Biotechnology Journal 7:4, pages 477-499.
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Atsushi Ogawa. (2011) Rational design of artificial riboswitches based on ligand-dependent modulation of internal ribosome entry in wheat germ extract and their applications as label-free biosensors. RNA 17:3, pages 478-488.
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Norihito Muranaka & Yohei Yokobayashi. (2010) Posttranscriptional Signal Integration of Engineered Riboswitches Yields Band‐Pass Output. Angewandte Chemie International Edition 49:27, pages 4653-4655.
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Norihito Muranaka & Yohei Yokobayashi. (2010) Posttranscriptional Signal Integration of Engineered Riboswitches Yields Band‐Pass Output. Angewandte Chemie 122:27, pages 4757-4759.
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Eric Young & Hal Alper. (2010) Synthetic Biology: Tools to Design, Build, and Optimize Cellular Processes. Journal of Biomedicine and Biotechnology 2010, pages 1-12.
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Atsushi Ogawa. (2009) Biofunction-Assisted Sensors Based on a New Method for Converting Aptazyme Activity into Reporter Protein Expression with High Efficiency in Wheat Germ Extract. ChemBioChem 10:15, pages 2465-2468.
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Norihito Muranaka, Koichi Abe & Yohei Yokobayashi. (2009) Mechanism-Guided Library Design and Dual Genetic Selection of Synthetic OFF Riboswitches. ChemBioChem 10:14, pages 2375-2381.
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