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Molecular Physics
An International Journal at the Interface Between Chemistry and Physics
Volume 67, 1989 - Issue 3
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Original Articles

Distribution and dynamics of mobile ions in systems of ordered B-DNA

L.E. Guldbrand Department of Theoretical Chemistry, University Chemical Laboratory, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England; Division of Physical Chemistry, Arrhenius Laboratory, University of Stockholm, S-106 91, Stockholm, Sweden
,
T.R. Forester Department of Theoretical Chemistry, University Chemical Laboratory, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England; Department of Chemistry, Addis Ababa University, PO Box 1176, Addis Ababa, Ethiopia
&
R.M. Lynden-Bell Department of Theoretical Chemistry, University Chemical Laboratory, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, England
Pages 473-493 | Received 16 Dec 1988, Accepted 01 Feb 1989, Published online: 23 Aug 2006

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J. C. GIL MONTORO. (1996) Discrete charge effects in the structure of ions around polyelectrolyte models. Molecular Physics 89:4, pages 1071-1086.
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J.C. Gil Montoro & J.L. F. Abascal. (1995) A Modulated Bulk as a Fuzzy Boundary for the Simulation of Long-Ranged Inhomogeneous Systems. Molecular Simulation 14:4-5, pages 313-329.
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T.R. Forester. (1991) A molecular dynamics study of electric field gradients in condensed B-DNA systems. Molecular Physics 73:6, pages 1335-1347.
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T.R. Forester & I.R. McDonald. (1991) Molecular dynamics studies of the behaviour of water molecules and small ions in concentrated solutions of polymeric B-DNA. Molecular Physics 72:3, pages 643-660.
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Articles from other publishers (25)

Terpsichori S. Alexiou & Christos N. Likos. (2023) Effective Interactions between Double-Stranded DNA Molecules in Aqueous Electrolyte Solutions: Effects of Molecular Architecture and Counterion Valency. The Journal of Physical Chemistry B 127:31, pages 6969-6981.
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Kaushik Chakraborty, Prabir Khatua & Sanjoy Bandyopadhyay. (2016) Exploring ion induced folding of a single-stranded DNA oligomer from molecular simulation studies. Physical Chemistry Chemical Physics 18:23, pages 15899-15910.
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P. Glancy. (2015) Concentration-dependent effects on fully hydrated DNA at terahertz frequencies. Journal of Biological Physics 41:3, pages 247-256.
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Alexander Lyubartsev. 2014. Dekker Encyclopedia of Nanoscience and Nanotechnology, Third Edition. Dekker Encyclopedia of Nanoscience and Nanotechnology, Third Edition 1193 1204 .
Francesca Mocci & Aatto Laaksonen. (2012) Insight into nucleic acid counterion interactions from inside molecular dynamics simulations is “worth its salt”. Soft Matter 8:36, pages 9268.
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P. Glancy & W. P. Beyermann. (2010) Dielectric properties of fully hydrated nucleotides in the terahertz frequency range. The Journal of Chemical Physics 132:24.
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Teena Goel, Chandra N. Patra, Swapan K. Ghosh & Tulsi Mukherjee. (2010) Three component model of cylindrical electric double layers containing mixed electrolytes: A systematic study by Monte Carlo simulations and density functional theory. The Journal of Chemical Physics 132:19.
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Daniel George Angelescu & Per Linse. (2007) Monte Carlo simulations of flexible polyelectrolytes inside viral capsids with dodecahedral charge distribution. Physical Review E 75:5.
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J. L. F. Abascal, M. Domercq & J. C. Gil Montoro. (2006) Computer Simulation of the Ionic Atmosphere around Z-DNA. The Journal of Physical Chemistry B 110:49, pages 25080-25090.
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Zhi-Jie Tan & Shi-Jie Chen. (2005) Electrostatic correlations and fluctuations for ion binding to a finite length polyelectrolyte. The Journal of Chemical Physics 122:4.
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E. Allahyarov, G. Gompper & H. Löwen. (2004) Attraction between DNA molecules mediated by multivalent ions. Physical Review E 69:4.
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E. Allahyarov, H. Löwen & G. Gompper. (2003) Adsorption of monovalent and multivalent cations and anions on DNA molecules. Physical Review E 68:6.
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José M. Martínez, Sofi K. C. Elmroth & Lars Kloo. (2001) Influence of Sodium Ions on the Dynamics and Structure of Single-Stranded DNA Oligomers:  A Molecular Dynamics Study. Journal of the American Chemical Society 123:49, pages 12279-12289.
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Nancy S. Kim, Qiqing Zhu & Pierre R. LeBreton. (1999) Aqueous Ionization and Electron-Donating Properties of Dinucleotides:  Sequence-Specific Electronic Effects on DNA Alkylation. Journal of the American Chemical Society 121:49, pages 11516-11530.
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Michael Feig & B. Montgomery Pettitt. (1999) Sodium and Chlorine Ions as Part of the DNA Solvation Shell. Biophysical Journal 77:4, pages 1769-1781.
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Juan Carlos Gil Montoro & José L. F. Abascal. (1998) Ionic distribution around simple B-DNA models II. Deviations from cylindrical symmetry. The Journal of Chemical Physics 109:14, pages 6200-6210.
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T. Das, D. Bratko, L. B. Bhuiyan & C. W. Outhwaite. (1997) Polyelectrolyte solutions containing mixed valency ions in the cell model: A simulation and modified Poisson–Boltzmann study. The Journal of Chemical Physics 107:21, pages 9197-9207.
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E.B Starikov. (1997) Chemical physics of solid-state nucleic acids: new intriguing horizons. Physics Reports 284:1-2, pages 1-89.
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Nancy S. Kim & Pierre R. LeBreton. (1997) Ultraviolet photoelectron spectral corrections applied to the quantum mechanical evaluation of nucleotide ionization potentials in water-counterion environments: The valence electronic structure of anionic 2′–deoxyadenosine 5′–phosphate. Biospectroscopy 3:1, pages 1-16.
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Nancy S. Kim & Pierre R. LeBreton. (1996) UV Photoelectron and ab Initio Quantum Mechanical Evaluation of Nucleotide Ionization Potentials in Water−Counterion Environments:  π Polarization Effects on DNA Alkylation by Carcinogenic Methylating Agents. Journal of the American Chemical Society 118:15, pages 3694-3707.
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J. C. Gil Montoro & J. L. F. Abascal. (1995) Ionic distribution around simple DNA models. I. Cylindrically averaged properties. The Journal of Chemical Physics 103:18, pages 8273-8284.
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Reinhard Klement. 1993. Computation of Biomolecular Structures. Computation of Biomolecular Structures 207 222 .
A. H. Juffer & H. J. C. Berendsen. 1993. Computation of Biomolecular Structures. Computation of Biomolecular Structures 201 206 .
Mats A. L Eriksson & Aatto Laaksonen. (2004) A molecular dynamics study of conformational changes and hydration of left‐handed d (CGCGCGCGCGCG) 2 in a nonsalt solution . Biopolymers 32:8, pages 1035-1059.
Crossref
N. Lavalle, S. A. Lee & A. Rupprecht. (2004) Counterion effects on the physical properties and the A to B transition of calf‐thymus DNA films. Biopolymers 30:9-10, pages 877-887.
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