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Journal of the American Statistical Association Volume 110, 2015 - Issue 510
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Applications and Case Studies

MAD Bayes for Tumor Heterogeneity—Feature Allocation With Exponential Family Sampling

Yanxun XuView further author information
,
Peter MüllerView further author information
,
Yuan YuanView further author information
,
Kamalakar GulukotaView further author information
&
Yuan JiView further author information
Pages 503-514 | Received 01 Mar 2014, Published online: 06 Jul 2015

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David B. Dahl, Devin J. Johnson & R. Jacob Andros. (2023) Comparison and Bayesian Estimation of Feature Allocations. Journal of Computational and Graphical Statistics 32:4, pages 1371-1382.
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Yang Ni, Yuan Ji & Peter Müller. (2020) Consensus Monte Carlo for Random Subsets Using Shared Anchors. Journal of Computational and Graphical Statistics 29:4, pages 703-714.
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Michalis K. Titsias & Christopher Yau. (2017) The Hamming Ball Sampler. Journal of the American Statistical Association 112:520, pages 1598-1611.
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Articles from other publishers (15)

Arthur Lui, Juhee Lee, Peter F Thall, May Daher, Katy Rezvani & Rafet Basar. (2023) A Bayesian feature allocation model for identifying cell subpopulations using CyTOF data. Journal of the Royal Statistical Society Series C: Applied Statistics 72:3, pages 718-738.
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Richard L. Warr, David B. Dahl, Jeremy M. Meyer & Arthur Lui. (2022) The Attraction Indian Buffet Distribution. Bayesian Analysis 17:3.
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Peter F. Thall. (2021) Adaptive Enrichment Designs in Clinical Trials. Annual Review of Statistics and Its Application 8:1, pages 393-411.
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Ani Eloyan, Mun Sang Yue & Davit Khachatryan. (2020) Tumor heterogeneity estimation for radiomics in cancer. Statistics in Medicine 39:30, pages 4704-4723.
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Tianjian Zhou, Subhajit Sengupta, Peter Müller & Yuan Ji. (2019) TreeClone: Reconstruction of tumor subclone phylogeny based on mutation pairs using next generation sequencing data. The Annals of Applied Statistics 13:2.
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Yang Ni, Peter Müller, Max Shpak & Yuan Ji. 2019. Pharmaceutical Statistics. Pharmaceutical Statistics 233 247 .
Genevieve L. Stein-O’Brien, Raman Arora, Aedin C. Culhane, Alexander V. Favorov, Lana X. Garmire, Casey S. Greene, Loyal A. Goff, Yifeng Li, Aloune Ngom, Michael F. Ochs, Yanxun Xu & Elana J. Fertig. (2018) Enter the Matrix: Factorization Uncovers Knowledge from Omics. Trends in Genetics 34:10, pages 790-805.
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Fangzheng Xie, Mingyuan Zhou & Yanxun Xu. (2018) BayCount: A Bayesian decomposition method for inferring tumor heterogeneity using RNA-Seq counts. The Annals of Applied Statistics 12:3.
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Oyetunji E. Ogundijo & Xiaodong Wang. (2018) Characterization of tumor heterogeneity by latent haplotypes: a sequential Monte Carlo approach. PeerJ 6, pages e4838.
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Farhoud Faraji, Adrian D. Schubert, Luciane T. Kagohara, Marietta Tan, Yanxun Xu, Munfarid Zaidi, Jean-Philippe Fortin, Carole Fakhry, Evgeny Izumchenko, Daria A. Gaykalova & Elana J. Fertig. 2018. Molecular Determinants of Head and Neck Cancer. Molecular Determinants of Head and Neck Cancer 293 325 .
Yichen Cheng, James Y. Dai, Thomas G. Paulson, Xiaoyu Wang, Xiaohong Li, Brian J. Reid & Charles Kooperberg. (2017) Quantification of multiple tumor clones using gene array and sequencing data. The Annals of Applied Statistics 11:2.
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Yanxun Xu, Peter Müller & Donatello Telesca. (2016) Bayesian Inference for Latent Biologic Structure With Determinantal Point Processes (DPP). Biometrics 72:3, pages 955-964.
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Juhee Lee, Peter Müller, Subhajit Sengupta, Kamalakar Gulukota & Yuan Ji. 2016. Statistical Analysis for High-Dimensional Data. Statistical Analysis for High-Dimensional Data 211 232 .
Peter Müller, Fernando Andres Quintana, Alejandro Jara & Tim HansonPeter Müller, Fernando Andrés Quintana, Alejandro Jara & Tim Hanson. 2015. Bayesian Nonparametric Data Analysis. Bayesian Nonparametric Data Analysis 145 174 .
Bo Li & Jun Z Li. (2014) A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data. Genome Biology 15:9.
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