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North American Journal of Fisheries Management Volume 33, 2013 - Issue 2
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ARTICLE

Contrast of Degraded and Restored Stream Habitat Using an Individual-Based Salmon Model

Steven F. Railsback Lang, Railsback and Associates, 250 California Avenue, Arcata, California, 95521, USA
,
Mark Gard U.S. Fish and Wildlife Service, Sacramento Fish and Wildlife Office, 2800 Cottage Way, Sacramento, California, 95825, USA
,
Bret C. Harvey U.S. Forest Service, Pacific Southwest Research Station, 1700 Bayview Drive, Arcata, California, 95521, USA
,
Jason L. White U.S. Forest Service, Pacific Southwest Research Station, 1700 Bayview Drive, Arcata, California, 95521, USA
&
Julie K. H. Zimmerman U.S. Fish and Wildlife Service, Bay-Delta Fish and Wildlife Office, 650 Capitol Mall, Sacramento, California, 95814, USA
Pages 384-399 | Received 23 Jun 2012, Accepted 02 Jan 2013, Published online: 19 Mar 2013

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M.A. Wilkes, E.C. Enders, A.T. Silva, M. Acreman & I. Maddock. (2017) Position choice and swimming costs of juvenile Atlantic salmon salmo salar in turbulent flow. Journal of Ecohydraulics 2:1, pages 16-27.
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Steven F. Railsback. (2016) Why It Is Time to Put PHABSIM Out to Pasture. Fisheries 41:12, pages 720-725.
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John W. Hayes, Eric Goodwin, Karen A. Shearer, Joe Hay & Lon Kelly. (2016) Can Weighted Useable Area Predict Flow Requirements of Drift-Feeding Salmonids? Comparison with a Net Rate of Energy Intake Model Incorporating Drift–Flow Processes. Transactions of the American Fisheries Society 145:3, pages 589-609.
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J. Louise Conrad, Eric Holmes, Carson Jeffres, Lynn Takata, Naoaki Ikemiyagi, Jacob Katz & Ted Sommer. (2016) Application of Passive Integrated Transponder Technology to Juvenile Salmon Habitat Use on an Experimental Agricultural Floodplain. North American Journal of Fisheries Management 36:1, pages 30-39.
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Steven F. Railsback, Bret C. Harvey & Jason L. White. (2015) Effects of Spatial Extent on Modeled Relations between Habitat and Anadromous Salmonid Spawning Success. Transactions of the American Fisheries Society 144:6, pages 1220-1236.
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Articles from other publishers (35)

Bret C. Harvey, Jason L. White, Rodney J. Nakamoto & Steven F. Railsback. (2024) Empirical and model‐based evaluation of a step‐pool stream restoration project: Consequences for a highly valued fish population. North American Journal of Fisheries Management.
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Travis Seaborn, Casey C. Day, Stephanie J. Galla, Tomas O. Höök, Elizabeth Jossie, Erin L. Landguth, Rongsong Liu & Ryan K. Simmons. (2023) Individual-Based Models for Incorporating Landscape Processes in the Conservation and Management of Aquatic Systems. Current Landscape Ecology Reports 8:3, pages 119-135.
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Steven F. Railsback & Bret C. Harvey. (2023) Can thermal refuges save salmonids? Simulation of cold‐pool benefits to salmonid populations. Transactions of the American Fisheries Society 152:4, pages 383-396.
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Mahboobeh Hajiesmaeili, Louis Addo, Johan Watz, Steven F. Railsback & John J. Piccolo. (2022) Individual‐based modelling of hydropeaking effects on brown trout and Atlantic salmon in a regulated river. River Research and Applications 39:3, pages 522-537.
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J. Ryan Bellmore, Christopher J. Sergeant, Rebecca A. Bellmore, Jeffrey A. Falke & Jason B. Fellman. (2023) Modeling coho salmon ( Oncorhynchus kisutch ) population response to streamflow and water temperature extremes . Canadian Journal of Fisheries and Aquatic Sciences 80:2, pages 243-260.
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Kristine Lund Bjørnås, Steven Railsback & John Piccolo. (2023) Modifying and parameterizing the individual-based model inSTREAM for Atlantic salmon and brown trout in the regulated Gullspång River, Sweden. MethodsX 10, pages 102243.
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SM Wilson, DA Patterson & JW Moore. (2022) Intra- and inter-population variation in sensitivity of migratory sockeye salmon smolts to phenological mismatch. Marine Ecology Progress Series 692, pages 119-136.
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H. Eve Robinson, Mark J. Henderson, Russell W. Perry, Damon H. Goodman & Nicholas A. Som. (2021) From site to system: Approaches for producing system‐wide estimates of fish habitat in large rivers. River Research and Applications 38:1, pages 119-130.
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Steven F. Railsback, Daniel Ayllón & Bret C. Harvey. (2021) InSTREAM 7: Instream flow assessment and management model for stream trout . River Research and Applications 37:9, pages 1294-1302.
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Vamsi Krishna Sridharan, Nigel W. T. QuinnSaurav KumarSteven C. McCutcheonEbrahim AhmadisharafXing Fang, Harry X. ZhangAndrew Parker. (2021) Selecting Reliable Models for Total Maximum Daily Load Development: Holistic Protocol. Journal of Hydrologic Engineering 26:10.
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Donald L. DeAngelis, Daniel Franco, Alan Hastings, Frank M. Hilker, Suzanne Lenhart, Frithjof Lutscher, Natalia Petrovskaya, Sergei Petrovskii & Rebecca C. Tyson. (2021) Towards Building a Sustainable Future: Positioning Ecological Modelling for Impact in Ecosystems Management. Bulletin of Mathematical Biology 83:10.
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William Jeff Reeder, Frank Gariglio, Ryan Carnie, Chunling Tang, Daniel Isaak, Qiuwen Chen, Zhongbo Yu, James A. McKean & Daniele Tonina. (2021) Some (fish might) like it hot: Habitat quality and fish growth from past to future climates. Science of The Total Environment 787, pages 147532.
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Kristine L. Bjørnås, Steven F. Railsback, Olle Calles & John J. Piccolo. (2021) Modeling Atlantic salmon (Salmo salar) and brown trout (S. trutta) population responses and interactions under increased minimum flow in a regulated river. Ecological Engineering 162, pages 106182.
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Jesse R. Blanchard, Rolando O. Santos & Jennifer S. Rehage. (2021) Sociability interacts with temporal environmental variation to spatially structure metapopulations: A fish dispersal simulation in an ephemeral landscape. Ecological Modelling 443, pages 109458.
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Bret C. Harvey & Steven F. Railsback. (2021) All Fish, All the Time: A Good General Objective for Fish Passage Projects?. Fisheries 46:3, pages 119-124.
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Steven F. Railsback, Bret C. Harvey & Daniel Ayllón. (2021) Importance of the Daily Light Cycle in Population–Habitat Relations: A Simulation Study. Transactions of the American Fisheries Society 150:1, pages 130-143.
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Bernhard Wegscheider, Tommi Linnansaari & R. Allen Curry. (2020) Mesohabitat modelling in fish ecology: A global synthesis. Fish and Fisheries 21:5, pages 927-939.
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B. L. Hawkins, A. H. Fullerton, B. L. Sanderson & E. A. Steel. (2020) Individual‐based simulations suggest mixed impacts of warmer temperatures and a nonnative predator on Chinook salmon. Ecosphere 11:8.
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Richard A. CarmichaelDaniele ToninaErnest R. KeeleyRohan M. BenjankarKevin E. See. (2020) Some like it slow: a bioenergetic evaluation of habitat quality for juvenile Chinook salmon in the Lemhi River, Idaho. Canadian Journal of Fisheries and Aquatic Sciences 77:7, pages 1221-1232.
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Peter N. Dudley. (2019) Insights from an individual based model of a fish population on a large regulated river. Environmental Biology of Fishes 102:8, pages 1069-1095.
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John G. Williams, Peter B. Moyle, J. Angus Webb & G. Mathias Kondolf. 2019. Environmental Flow Assessment. Environmental Flow Assessment 185 213 .
Peter N. Dudley. (2019) S 4 : A Spatially Continuous, Individual‐Based Model of Salmonid Redd Superimposition . Transactions of the American Fisheries Society 148:2, pages 352-372.
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Dudley W. Reiser & Phillip J. Hilgert. (2018) A Practitioner's Perspective on the Continuing Technical Merits of PHABSIM . Fisheries 43:6, pages 278-283.
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Peter N. Dudley. (2018) A salmonid individual‐based model as a proposed decision support tool for management of a large regulated river. Ecosphere 9:1.
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Barbara J. Robson, Rebecca E. Lester, Darren S. Baldwin, Nicholas R. Bond, Romain Drouart, Robert J. Rolls, Darren S. Ryder & Ross M. Thompson. (2017) Modelling food-web mediated effects of hydrological variability and environmental flows. Water Research 124, pages 108-128.
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Steven F. RailsbackBret C. HarveySarah J. KupferbergMargaret M. LangScott McBainHart H. WelshJr.Jr.. (2016) Modeling potential river management conflicts between frogs and salmonids. Canadian Journal of Fisheries and Aquatic Sciences 73:5, pages 773-784.
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Daniel Ayllón, Steven F. Railsback, Simone Vincenzi, Jürgen Groeneveld, Ana Almodóvar & Volker Grimm. (2016) InSTREAM-Gen: Modelling eco-evolutionary dynamics of trout populations under anthropogenic environmental change. Ecological Modelling 326, pages 36-53.
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C. Jørgensen, K. Enberg & M. Mangel. (2016) Modelling and interpreting fish bioenergetics: a role for behaviour, life‐history traits and survival trade‐offs. Journal of Fish Biology 88:1, pages 389-402.
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Kevin A. Wood, Richard A. Stillman & John D. Goss‐Custard. (2015) Co‐creation of individual‐based models by practitioners and modellers to inform environmental decision‐making. Journal of Applied Ecology 52:4, pages 810-815.
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Richard A. Stillman, Steven F. Railsback, Jarl Giske, Uta Berger & Volker Grimm. (2014) Making Predictions in a Changing World: The Benefits of Individual-Based Ecology. BioScience 65:2, pages 140-150.
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Steven F. RailsbackBret C. HarveyJason L. White. (2014) Facultative anadromy in salmonids: linking habitat, individual life history decisions, and population-level consequences. Canadian Journal of Fisheries and Aquatic Sciences 71:8, pages 1270-1278.
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Andrew W. Hafs, Lee R. Harrison, Ryan M. Utz & Thomas Dunne. (2014) Quantifying the role of woody debris in providing bioenergetically favorable habitat for juvenile salmon. Ecological Modelling 285, pages 30-38.
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John J. Piccolo, Béatrice M. Frank & John W. Hayes. (2014) Food and space revisited: The role of drift-feeding theory in predicting the distribution, growth, and abundance of stream salmonids. Environmental Biology of Fishes 97:5, pages 475-488.
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Jordan S. Rosenfeld, Nicolaas Bouwes, C. Eric Wall & Sean M. Naman. (2013) Successes, failures, and opportunities in the practical application of drift-foraging models. Environmental Biology of Fishes 97:5, pages 551-574.
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Kurt D. Fausch. (2013) A historical perspective on drift foraging models for stream salmonids. Environmental Biology of Fishes 97:5, pages 453-464.
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