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Original Articles

Theoretical Account of the ‘Spine of Hydration’ in the Minor Groove of Duplex d(CGCGAATTCGCG)

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Pages 1161-1165 | Received 18 Sep 1989, Published online: 21 May 2012

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ThomasE. Cheatham$suffix/text()$suffix/text(), Jayashree Srinivasan, DavidA. Case & PeterA. Kollman. (1998) Molecular Dynamics and Continuum Solvent Studies of the Stability of PolyG-PolyC and PolyA-PolyT DNA Duplexes in Solution. Journal of Biomolecular Structure and Dynamics 16:2, pages 265-280.
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Articles from other publishers (18)

Zhenhua Sun, Dongli Chen, Tao Lan & Larry W. McLaughlin. (2002) Importance of minor groove functional groups for the stability of DNA duplexes. Biopolymers 65:3, pages 211-217.
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Tao Lan & Larry W. McLaughlin. (2001) Minor Groove Functional Groups Are Critical for the B-Form Conformation of Duplex DNA. Biochemistry 40:4, pages 968-976.
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T. Castrignanò, G. Chillemi & A. Desideri. (2000) Structure and Hydration of BamHI DNA Recognition Site: A Molecular Dynamics Investigation. Biophysical Journal 79:3, pages 1263-1272.
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Michael Feig & B.Montgomery Pettitt. (1999) Modeling high-resolution hydration patterns in correlation with DNA sequence and conformation 1 1Edited by B. Honig. Journal of Molecular Biology 286:4, pages 1075-1095.
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Michael Feig & B Montgomery Pettitt. (1998) Crystallographic water sites from a theoretical perspective. Structure 6:11, pages 1351-1354.
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Yong Duan, Patricia Wilkosz, Michael Crowley & John M Rosenberg. (1997) Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: conformation and hydration. Journal of Molecular Biology 272:4, pages 553-572.
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Pascal Auffinger & Eric Westhof. (1997) RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA Asp anticodon hairpin 1 1Edited by J. Karn. Journal of Molecular Biology 269:3, pages 326-341.
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Matthew A. Young, B. Jayaram & D. L. Beveridge. (1997) Intrusion of Counterions into the Spine of Hydration in the Minor Groove of B-DNA:  Fractional Occupancy of Electronegative Pockets. Journal of the American Chemical Society 119:1, pages 59-69.
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D. Genest. (1996) How long does DNA keep the memory of its conformation? A time-dependent canonical correlation analysis of molecular dynamics simulation. Biopolymers 38:3, pages 389-400.
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Scott E. Osborne, Jens Völker, Shawn Y. Stevens, Kenneth J. Breslauer & Gary D. Glick. (1996) Design, Synthesis, and Analysis of Disulfide Cross-Linked DNA Duplexes. Journal of the American Chemical Society 118:48, pages 11993-12003.
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Reinhard V. Gessner, Gary J. Quigley & Martin Egli. (1994) Comparative studies of high resolution Z-DNA crystal structures Part 1: Common hydration patterns of alternating dC-dG. Journal of Molecular Biology 236:4, pages 1154-1168.
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P. S. Subramanian & D. L. Beveridge. (1993) A Monte Carlo simulation study of the aqueous hydration of d(CGCGCG) in Z form. Theoretica Chimica Acta 85:1-3, pages 3-15.
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F. Vovelle & J. M. Goodfellow. 1993. Water and Biological Macromolecules. Water and Biological Macromolecules 244 265 .
E. Westhof. 1993. Water and Biological Macromolecules. Water and Biological Macromolecules 226 243 .
D. L. Beveridge, S. Swaminathan, G. Ravishanker, J. M. Withka, J. Srinivasan, C. Prevost, S. Louise-May, D. R. Langley, F. M. DiCapua & P. H. Bolton. 1993. Water and Biological Macromolecules. Water and Biological Macromolecules 165 225 .
Mats A. L Eriksson & Aatto Laaksonen. (2004) A molecular dynamics study of conformational changes and hydration of left‐handed d (CGCGCGCGCGCG) 2 in a nonsalt solution . Biopolymers 32:8, pages 1035-1059.
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Bohdan Schneider, Dawn Cohen & Helen M. Berman. (2004) Hydration of DNA bases: Analysis of crystallographic data. Biopolymers 32:7, pages 725-750.
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Helen M. Berman. (1991) Hydration of DNA. Current Opinion in Structural Biology 1:3, pages 423-427.
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