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Journal of Biomolecular Structure and Dynamics Volume 7, 1990 - Issue 6
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Original Articles

A Parallel Stranded Linear DNA Duplex Incorporating dG · dC Base Pairs

Karsten Rippe Max Planck Institute for Biophysical Chemistry, Department of Molecular Biology, P.O. Box 2841, D-3400, Göttingen, F.R.G.
,
Niels B. Ramsing Max Planck Institute for Biophysical Chemistry, Department of Molecular Biology, P.O. Box 2841, D-3400, Göttingen, F.R.G.
,
Reinhard Klement Max Planck Institute for Biophysical Chemistry, Department of Molecular Biology, P.O. Box 2841, D-3400, Göttingen, F.R.G.
&
Thomas M. Jovin Max Planck Institute for Biophysical Chemistry, Department of Molecular Biology, P.O. Box 2841, D-3400, Göttingen, F.R.G.
Pages 1199-1209 | Received 01 Jan 1990, Published online: 21 May 2012

Citations (33)

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I. Förtsch, E. Birch-Hirschfeld, T.M. Jovin, A. Stelzner & C. Zimmer. (1998) Studies on the Interaction of Dna-Ligands with Modified Parallel-Stranded Duplex-Dna Oligomers. Nucleosides and Nucleotides 17:9-11, pages 1539-1545.
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Jiří Šponer, Jan Florián, Pavel Hobza & Jerzy Leszczynski. (1996) Nonplanar DNA Base Pairs. Journal of Biomolecular Structure and Dynamics 13:5, pages 827-833.
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NickolaiA. Tchurikov, NataliaA. Ponomarenko, YuliaB. Golova & Boris K. Chernov. (1995) The Formation Of Parallel RNA-RNA Duplexes In Vitro . Journal of Biomolecular Structure and Dynamics 13:3, pages 507-513.
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Jiří Šponer & Pavel Hobza. (1994) G.C. Base Pair in Parallel-Stranded DNA—A Novel Type of Base Pairing: An ab initio Quantum Chemical Study. Journal of Biomolecular Structure and Dynamics 12:3, pages 671-680.
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AnnaK. Shchyolkina, OlgaF. Borisova, BorisK. Chernov & NickolaiA. Tchurikov. (1994) Parallel-Stranded DNA with Mixed Sequence. Evidence for Conformational Transition in Solution at Low Water Activity. Journal of Biomolecular Structure and Dynamics 11:6, pages 1237-1249.
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E. Paleček. (1991) Local Supercoil-Stabilized DNA Structure. Critical Reviews in Biochemistry and Molecular Biology 26:2, pages 151-226.
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Articles from other publishers (27)

Manoj Kumar Gupta, Bharath Raj Madhanagopal & Krishna N. Ganesh. (2020) Peptide Nucleic Acid with Double Face: Homothymine–Homocytosine Bimodal Cα-PNA ( bm -Cα-PNA) Forms a Double Duplex of the bm -PNA 2 :DNA Triplex . The Journal of Organic Chemistry 86:1, pages 414-428.
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Mohit Chawla, Yury Minenkov, Khanh B. Vu, Romina Oliva & Luigi Cavallo. (2019) Structural and Energetic Impact of Non‐natural 7‐Deaza‐8‐azaguanine, 7‐Deaza‐8‐azaisoguanine, and Their 7‐Substituted Derivatives on Hydrogen‐Bond Pairing with Cytosine and Isocytosine. ChemBioChem 20:17, pages 2262-2270.
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Tim Efthymiou, Jesse Gavette, Matthias Stoop, Francesco De Riccardis, Mathy Froeyen, Piet Herdewijn & Ramanarayanan Krishnamurthy. (2018) Chimeric XNA: An Unconventional Design for Orthogonal Informational Systems. Chemistry – A European Journal 24:49, pages 12811-12819.
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Maryam Habibian, Maryam Yahyaee-Anzahaee, Matije Lucic, Elena Moroz, Nerea Martín-Pintado, Logan Dante Di Giovanni, Jean-Christophe Leroux, Jonathan Hall, Carlos González & Masad J Damha. (2018) Structural properties and gene-silencing activity of chemically modified DNA–RNA hybrids with parallel orientation. Nucleic Acids Research 46:4, pages 1614-1623.
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Mohit Chawla, Ida Autiero, Romina Oliva & Luigi Cavallo. (2018) Energetics and dynamics of the non-natural fluorescent 4AP:DAP base pair. Physical Chemistry Chemical Physics 20:5, pages 3699-3709.
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Soham Mandal, Can Wang, Rajneesh K. Prajapati, Jutta Kösters, Sandeep Verma, Lifeng Chi & Jens Müller. (2016) Metal-Mediated Assembly of 1, N 6 -Ethenoadenine: From Surfaces to DNA Duplexes . Inorganic Chemistry 55:14, pages 7041-7050.
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Mohit Chawla, Safwat Abdel-Azeim, Romina Oliva & Luigi Cavallo. (2014) Higher order structural effects stabilizing the reverse Watson–Crick Guanine-Cytosine base pair in functional RNAs. Nucleic Acids Research 42:2, pages 714-726.
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Xin Ming, Ping Ding, Peter Leonard, Simone Budow & Frank Seela. (2012) Parallel-stranded DNA: Enhancing duplex stability by the ‘G-clamp’ and a pyrrolo-dC derivative. Organic & Biomolecular Chemistry 10:9, pages 1861.
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Pradeep S. Pallan, Paolo Lubini, Martin Bolli & Martin Egli. (2007) Backbone-base inclination as a fundamental determinant of nucleic acid self- and cross-pairing. Nucleic Acids Research 35:19, pages 6611-6624.
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Romina Oliva, Anna Tramontano & Luigi Cavallo. (2007) Mg 2+ binding and archaeosine modification stabilize the G15–C48 Levitt base pair in tRNAs . RNA 13:9, pages 1427-1436.
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F. Geinguenaud, J.A. Mondragon-Sanchez, J. Liquier, A.K. Shchyolkina, R. Klement, D.J. Arndt-Jovin, T.M. Jovin & E. Taillandier. (2005) Parallel DNA double helices incorporating isoG or m5isoC bases studied by FTIR, CD and molecular modeling. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 61:4, pages 579-587.
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Daniel Barsky & Michael E. Colvin. (2000) Guanine−Cytosine Base Pairs in Parallel-Stranded DNA:  An ab Initio Study of the Keto−Amino Wobble Pair versus the Enol−Imino Minor Tautomer Pair. The Journal of Physical Chemistry A 104:37, pages 8570-8576.
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Nickolai A. Tchurikov, Ludmila G. Chistyakova, Genadii B. Zavilgelsky, Iliya V. Manukhov, Boris K. Chernov & Yulia B. Golova. (2000) Gene-specific Silencing by Expression of Parallel Complementary RNA in Escherichia coli. Journal of Biological Chemistry 275:34, pages 26523-26529.
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Anna K. Shchyolkina, Olga F. Borisova, Michael A. Livshits, Galina E. Pozmogova, Boris K. Chernov, Reinhard Klement & Thomas M. Jovin. (2000) Parallel-Stranded DNA with Mixed AT/GC Composition:  Role of trans G·C Base Pairs in Sequence Dependent Helical Stability. Biochemistry 39:33, pages 10034-10044.
Crossref
N.U Zhanpeisov & J Leszczynski. (1999) Specific solvation effects on the structures and properties of Watson–Crick and reverse Watson–Crick isocytosine–cytosine and guanine–cytosine base pairs: a theoretical ab initio study. Journal of Molecular Structure: THEOCHEM 487:1-2, pages 107-115.
Crossref
Frank Seela & Alexander Melenewski. (1999) 5-Aza-7-deaza-2′-deoxyguanosine: Oligonucleotide Duplexes with Novel Base Pairs, Parallel Chain Orientation and Protonation Sites in the Core of a Double Helix. European Journal of Organic Chemistry 1999:2, pages 485-496.
Crossref
Shahla Mohammadi, Reinhard Klement, Anna K. Shchyolkina, Jean Liquier, Thomas M. Jovin & Eliane Taillandier. (1998) FTIR and UV Spectroscopy of Parallel-Stranded DNAs with Mixed A•T/G•C Sequences and Their A•T/I•C Analogues. Biochemistry 37:47, pages 16529-16537.
Crossref
Frank Seela, Alexander Melenewski & Changfu Wei. (1997) Parallel-stranded duplex DNA formed by a new base pair between guanine and 5-aza-7-deazaguanine. Bioorganic & Medicinal Chemistry Letters 7:17, pages 2173-2176.
Crossref
Ji?� ?poner & Pavel Hobza. (1996) DNA base amino groups and their role in molecular interactions: Ab initio and preliminary density functional theory calculations. International Journal of Quantum Chemistry 57:5, pages 959-970.
Crossref
Ingo Förtsch, Hartmut Fritzsche, Eckhard Birch-Hirschfeld, Elisabeth Evertsz, Reinhard Klement, Thomas M. Jovin & Christoph Zimmer. (1998) Parallel-stranded duplex DNA containing dA · dU base pairs. Biopolymers 38:2, pages 209-220.
Crossref
Christophe Escudé, Shahla Mohammadi, Jian-Sheng Sun, Chi-Hung Nguyen, Emile Bisagni, Jean Liquier, Eliane Taillandier, Thérèse Garestier & Claude Hélène. (1996) Ligand-induced formation of Hoogsteen-paired parallel DNA. Chemistry & Biology 3:1, pages 57-65.
Crossref
M.W. Germann, N. Zhou, J.H. van de Sande & H.J. Vogel. 1995. Nuclear Magnetic Resonance and Nucleic Acids. Nuclear Magnetic Resonance and Nucleic Acids 207 225 .
O.F. Borisova, A.K. Shchyolkina, B.K. Chernov & N.A. Tchurikov. (2001) Relative stability of AT and GC pairs in parallel DNA duplex formed by a natural sequence. FEBS Letters 322:3, pages 304-306.
Crossref
Karsten Rippe & Thomas M. Jovin. 1992. DNA Structures Part A: Synthesis and Physical Analysis of DNA. DNA Structures Part A: Synthesis and Physical Analysis of DNA 199 220 .
Randy M. Wadkins & Thomas M. Jovin. (2002) Actinomycin D and 7-aminoactinomycin D binding to single-stranded DNA. Biochemistry 30:39, pages 9469-9478.
Crossref
T. M. Jovin. 1991. Nucleic Acids and Molecular Biology. Nucleic Acids and Molecular Biology 25 38 .
Jan Klysik, Karsten Rippe & Thomas M. Jovin. (2002) Reactivity of parallel-stranded DNA to chemical modification reagents. Biochemistry 29:42, pages 9831-9839.
Crossref

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