Citations (20)
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Svatava Neugebauerová & Jaroslav Kypr. (2000) Invariant and Variable Base Stacking Geometries in B-DNA and A-DNA. Journal of Biomolecular Structure and Dynamics 18:1, pages 73-81.
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Jiří Šponer, Jerzy Leszczynski, Vladimír Vetterl & Pavel Hobza. (1996) Base Stacking and Hydrogen Bonding in Protonated Cytosine Dimer: The Role of Molecular ion-dipole and Induction Interactions. Journal of Biomolecular Structure and Dynamics 13:4, pages 695-706.
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Jiřrí Šponer & Jaroslav Kypr. (1993) Theoretical Analysis of the Base Stacking in DNA: Choice of the Force Field and a Comparison with the Oligonucleotide Crystal Structures. Journal of Biomolecular Structure and Dynamics 11:2, pages 277-292.
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Jiří Šponer & Jaroslav Kypr. (1993) Relationships among Rise, Cup, Roll and Stagger in DNA Suggested by Empirical Potential Studies of Base Stacking. Journal of Biomolecular Structure and Dynamics 11:1, pages 27-41.
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Michaela Vorlíčková, János Sági, Anna Szabolcs, Kati Ebinger, Irén Fellegvári & Jaroslav Kypr. (1993) Conformational Isomerizations of Poly(dA-dT) Are Dramatically Influenced by a Substitution of a Minor Amount of Adenine by Purine or Amino2purine. Journal of Biomolecular Structure and Dynamics 10:4, pages 681-692.
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Articles from other publishers (15)
Alfredo Peguero-Tejada & Arjan van der Vaart. (2016) Biasing Simulations of DNA Base Pair Parameters with Application to Propellor Twisting in AT/AT, AA/TT, and AC/GT Steps and Their Uracil Analogs. Journal of Chemical Information and Modeling 57:1, pages 85-92.
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Agnes NoyRamin Golestanian. (2010) The Chirality of DNA: Elasticity Cross-Terms at Base-Pair Level Including A-Tracts and the Influence of Ionic Strength. The Journal of Physical Chemistry B 114:23, pages 8022-8031.
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Jiří Šponer, Petr Jurečka, Ivan Marchan, F. Javier Luque, Modesto Orozco & Pavel Hobza. (2006) Nature of Base Stacking: Reference Quantum‐Chemical Stacking Energies in Ten Unique B‐DNA Base‐Pair Steps. Chemistry – A European Journal 12:10, pages 2854-2865.
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Lukáš Trantı́rek, Richard Štefl, Michaela Vorlı́čková, Jaroslav Koča, Vladimı́r Sklenářář & Jaroslav Kypr. (2000) An A-type double helix of DNA having B-type puckering of the deoxyribose rings. Journal of Molecular Biology 297:4, pages 907-922.
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V. Subramanian, D. Sivanesan & T. Ramasami. (1998) The role of solvent on the base stacking properties of the stacked cytosine dimer. Chemical Physics Letters 290:1-3, pages 189-192.
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Ben Luisi, Modesto Orozco, Jiri Sponer, Francisco J Luque & Zippora Shakked. (1998) On the potential role of the amino nitrogen atom as a hydrogen bond acceptor in macromolecules. Journal of Molecular Biology 279:5, pages 1123-1136.
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Markus C. Wahl & Muttaiya Sundaralingam. (1999) Crystal structures of A‐DNA duplexes. Biopolymers 44:1, pages 45-63.
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Jire� Seponer, Jerzy Leszczynski & Pavel Hobza. (1996) Base stacking in cytosine dimer. A comparison of correlatedab initio calculations with three empirical potential models and density functional theory calculations. Journal of Computational Chemistry 17:7, pages 841-850.
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Ji?� ?poner & Pavel Hobza. (1996) DNA base amino groups and their role in molecular interactions: Ab initio and preliminary density functional theory calculations. International Journal of Quantum Chemistry 57:5, pages 959-970.
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Jiří Šponer, Jerzy Leszczyński & Pavel Hobza. (1996) Nature of Nucleic Acid−Base Stacking: Nonempirical ab Initio and Empirical Potential Characterization of 10 Stacked Base Dimers. Comparison of Stacked and H-Bonded Base Pairs. The Journal of Physical Chemistry 100:13, pages 5590-5596.
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Jiří Šponer & Jaroslav Kypr. (1994) Close mutual contacts of the amino groups in DNA. International Journal of Biological Macromolecules 16:1, pages 3-6.
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Jiří Šponer & Pavel Hobza. (1994) Sequence dependent intrinsic deformability of the DNA base amino groups. An ab initio quantum chemical analysis. Journal of Molecular Structure: THEOCHEM 304:1, pages 35-40.
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Harry P. Rappaport. (2002) Replication of the base pair 6-thioguanine/5-methyl-2-pyrimidinone with the large Klenow fragment of Escherichia coli DNA polymerase I. Biochemistry 32:12, pages 3047-3057.
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Monique MONNOT, Olivier MAUFFRET, Elie LESCOT & Serge FERMANDJIAN. (2005) Probing intercalation and conformational effects of the anticancer drug 2‐methyl‐9‐hydroxyellipticinium acetate in DNA fragments with circular dichroism. European Journal of Biochemistry 204:3, pages 1035-1039.
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Jiří Šponer & Jaroslav Kypr. (1991) Different intrastrand and interstrand contributions to stacking account for roll variations at the alternating purine-pyrimidine sequences in A-DNA and A-RNA. Journal of Molecular Biology 221:3, pages 761-764.
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