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Journal of Biomolecular Structure and Dynamics Volume 10, 1992 - Issue 1
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Original Articles

Strong Binding of Single-stranded DNA by Stem-loop Oligonucleotides

David J. D'Souza Department of Chemistry, University of Rochester, Rochester, New York, 14627
&
Eric T. Kool Department of Chemistry, University of Rochester, Rochester, New York, 14627
Pages 141-152 | Received 31 Mar 1992, Published online: 21 May 2012

Citations (18)

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L.M. Tsay, S.-B. Lin, H.T. Tsay, H.H. Chen & L.-S. Kan. (1995) A Study of Triplex Formation of 5′-d-T-(C-T-)2C-(T-)4C-(T-C-)2T with 5′-d-A-(G-A-)2G A Hairpin Triplex with Three T · A · T and Three C+ · G · C Bases Triads. Journal of Biomolecular Structure and Dynamics 12:6, pages 1235-1245.
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DavidM. Noll, JessicaL. O'Rear, CynthiaD. Cushman & PaulS. Miller. (1994) Interaction of Oligodeoxyribonucleotides Through Formation of Chimeric Duplex/Triplex Complexes. Nucleosides and Nucleotides 13:4, pages 997-1005.
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Articles from other publishers (16)

Jee Eun Kang, Antonio Ciampi & Mohamed Hijri. (2020) SeSaMe PS Function: Functional Analysis of the Whole Metagenome Sequencing Data of the Arbuscular Mycorrhizal Fungi. Genomics, Proteomics & Bioinformatics 18:5, pages 613-623.
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Rachel M. Mitton-FrySuzanne J. DeGregorioJimin WangThomas A. SteitzJoan A. Steitz. (2010) Poly(A) Tail Recognition by a Viral RNA Element Through Assembly of a Triple Helix. Science 330:6008, pages 1244-1247.
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Vadim V Demidov & Maxim D Frank-Kamenetskii. (2004) Two sides of the coin: affinity and specificity of nucleic acid interactions. Trends in Biochemical Sciences 29:2, pages 62-71.
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Thomas AntonyVinod Subramaniam. (2002) A Molecular Beacon Strategy for Real-Time Monitoring of Triplex DNA Formation Kinetics. Antisense and Nucleic Acid Drug Development 12:3, pages 145-154.
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Eric T. Kool. 1999. Comprehensive Natural Products Chemistry. Comprehensive Natural Products Chemistry 341 369 .
Eric T. Kool. (1998) Recognition of DNA, RNA, and Proteins by Circular Oligonucleotides. Accounts of Chemical Research 31:8, pages 502-510.
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Eric T. Kool. (1996) Topological modification of oligonucleotides for potential inhibition of gene expression. Perspectives in Drug Discovery and Design 4:1, pages 61-75.
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Xiao‐Feng Ren, Barbara A. Schweitzer, Charles J. Sheils & Eric T. Kool. (2006) Stabile DNA‐Schleifen durch Einbau unpolarer und keine Wasserstoffbrücken bildender Nucleosid‐Isostere. Angewandte Chemie 108:7, pages 834-837.
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Ekambar R. Kandimalla & Sudhir Agrawal. (1996) Hoogsteen DNA Duplexes of 3‘−3‘- and 5‘−5‘-Linked Oligonucleotides and Triplex Formation with RNA and DNA Pyrimidine Single Strands:  Experimental and Molecular Modeling Studies. Biochemistry 35:48, pages 15332-15339.
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Shaohui Wang & Eric T. Kool. (2002) Origins of the Large Differences in Stability of DNA and RNA Helixes: C-5 Methyl and 2'-Hydroxyl Effects. Biochemistry 34:12, pages 4125-4132.
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Jean-Christophe Francois & Claude Helene. (2002) Recognition and Cleavage of Single-Stranded DNA Containing Hairpin Structures by Oligonucleotides Forming Both Watson-Crick and Hoogsteen Hydrogen Bonds. Biochemistry 34:1, pages 65-72.
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Markus Tarköy, Martin Bolli & Christian Leumann. (1994) Nucleic-Acid Analogues with Restricted Conformational Flexibility in the Sugar-Phosphate Backbone (‘bicyclo-DNA’). Part 3. Synthesis, pairing properties, and calorimetric determination of duplex and triplex stability of decanucleotides from [(3′S,5′R)-2′-. Helvetica Chimica Acta 77:3, pages 716-744.
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Mark A. Booher, Shaohui Wang & Eric T. Kool. (2002) Base Pairing and Steric Interactions between Pyrimidine Strand Bridging Loops and the Purine Strand in DNA Pyrimidine.cntdot.Purine.cntdot.Pyrimidine Triplexes. Biochemistry 33:15, pages 4645-4651.
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Shaohui Wang, Mark A. Booher & Eric T. Kool. (2002) Stabilities of Nucleotide Loops Bridging the Pyrimidine Strands in DNA Pyrimidine.cntdot.Purine.cntdot.Pyrimidine Triplexes: Special Stability of the CTTTG Loop. Biochemistry 33:15, pages 4639-4644.
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David J. d'Souza & Eric T. Kool. (1994) Solvent pH, and ionic effects on the binding of single-stranded DNA by circular oligodeoxynucleotides. Bioorganic & Medicinal Chemistry Letters 4:8, pages 965-970.
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. (1993) An Indexed Bibliography of Antisense Literature, 1992. Antisense Research and Development 3:1, pages 95-153.
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