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Journal of Biomolecular Structure and Dynamics Volume 10, 1992 - Issue 3
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Original Articles

Triple Helical Polynucleotidic Structures: An FTIR Study Of The C+ · G · C Triplet

A. Akhebat Laboratoire CSSB URA CNRS 1430, UFR de Médecine Université Paris XIII, 74 rue Marcel Cachin, F93000, Bobigny, FRANCE
,
C. Dagneaux Laboratoire CSSB URA CNRS 1430, UFR de Médecine Université Paris XIII, 74 rue Marcel Cachin, F93000, Bobigny, FRANCE
,
J. Liquier Laboratoire CSSB URA CNRS 1430, UFR de Médecine Université Paris XIII, 74 rue Marcel Cachin, F93000, Bobigny, FRANCE
&
E. Taillandier Laboratoire CSSB URA CNRS 1430, UFR de Médecine Université Paris XIII, 74 rue Marcel Cachin, F93000, Bobigny, FRANCE
Pages 577-588 | Received 29 Jul 1992, Published online: 21 May 2012

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Thibaut Michel, Françoise Debart, Jean-Jacques Vasseur, Frédéric Geinguenaud & Eliane Taillandier. (2003) FTIR and UV Spectroscopy Studies of Triplex Formation Between α-Oligonucleotides with Non-Ionic Phoshoramidate Linkages and DNA Targets. Journal of Biomolecular Structure and Dynamics 21:3, pages 435-445.
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EkambarR. Kandimalla, Ganesh Venkataraman, V. Sasisekharan & Sudhir Agrawal. (1997) Single-Stranded DNA and RNA Targeted Triplex-Formation: UV, CD and Molecular Modeling Studies of Foldback Triplexes Containing Different RNA, 2′-OMe-RNA and DNA Strand Combinations. Journal of Biomolecular Structure and Dynamics 14:6, pages 715-726.
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Ye Fang, Chunli Bai, Ying Wei, S.-B. Lin & Lou-sing Kan. (1995) Effect of Selective Cytosine Methylation and Hydration on the Conformations of DNA Triple Helices Containing a TTTT Loop Structure by FT-IR Spectroscopy. Journal of Biomolecular Structure and Dynamics 13:3, pages 471-482.
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C. Dagneaux, H. Porumb, J. Liquier, M. Takahashi & E. Taillandier. (1995) Conformations of Three-Stranded DNA Structures Formed in Presence and in Absence of the RecA Protein. Journal of Biomolecular Structure and Dynamics 13:3, pages 465-470.
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Mariusz Jaskólski, Maria Gdaniec, Miroslaw Gilski, Magdalena Alejska & MariaD. Bratek-Wiewiórowska. (1994) Crystal Structure of 2′-Deoxycytidine Hemidihydrogenphosphate Reveals C+·C Base Pairs and Tight, Hydrogen-Bonded (H2PO4 −)∞ Columns (1). Journal of Biomolecular Structure and Dynamics 11:6, pages 1287-1306.
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C.Y. Sekharudu, N. Yathindra & M. Sundaralingam. (1993) Molecular Dynamics Investigations of DNA Triple Helical Models: Unique Features of the Watson-Crick Duplex. Journal of Biomolecular Structure and Dynamics 11:2, pages 225-244.
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Articles from other publishers (27)

Nykola C. Jones, Steen Brøndsted Nielsen & Søren Vrønning Hoffmann. (2020) On the delocalization length in RNA single strands of cytosine: how many bases see the light?. Physical Chemistry Chemical Physics 22:4, pages 2188-2192.
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Allison L. Stelling, Yu Xu, Huiqing Zhou, Seung H. Choi, Mary C. Clay, Dawn K. Merriman & Hashim M. Al-Hashimi. (2017) Robust IR-based detection of stable and fractionally populated G-C + and A-T Hoogsteen base pairs in duplex DNA . FEBS Letters 591:12, pages 1770-1784.
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Neelam Lohani & Moganty R. Rajeswari. (2016) Preferential binding of anticancer drugs to triplex DNA compared to duplex DNA: a spectroscopic and calorimetric study. RSC Advances 6:46, pages 39903-39917.
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Anne Ivalu Sander Holm, Lisbeth Munksgaard Nielsen, Søren Vrønning Hoffmann & Steen Brøndsted Nielsen. (2010) Vacuum-ultraviolet circular dichroism spectroscopy of DNA: a valuable tool to elucidate topology and electronic coupling in DNA. Physical Chemistry Chemical Physics 12:33, pages 9581.
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Anne I. S. Holm, Lisbeth M. Nielsen, Bern Kohler, Søren Vrønning Hoffmann & Steen Brøndsted Nielsen. (2010) Electronic coupling between cytosine bases in DNA single strands and i-motifs revealed from synchrotron radiation circular dichroism experiments. Physical Chemistry Chemical Physics 12:14, pages 3426.
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C. Paris, F. Geinguenaud, C. Gouyette, J. Liquier & J. Lacoste. (2007) Mechanism of Copper Mediated Triple Helix Formation at Neutral pH in Drosophila Satellite Repeats. Biophysical Journal 92:7, pages 2498-2506.
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D. Tsankov, M. Krasteva, V. Andrushchenko, J.H. van de Sande & H. Wieser. (2006) Vibrational circular dichroism signature of hemiprotonated intercalated four-stranded i-DNA. Biophysical Chemistry 119:1, pages 1-6.
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J.A. Mondragón-Sánchez, J. Liquier, S.M. Gryaznov & E. Taillandier. (2003) A pyrimidine motif DNA triplex with a third N3′→P5′ phosphoramidate d-C,T strand studied by FTIR and UV spectroscopy. Journal of Molecular Structure 661-662, pages 183-193.
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Martina Banyay, Munna Sarkar & Astrid Gräslund. (2003) A library of IR bands of nucleic acids in solution. Biophysical Chemistry 104:2, pages 477-488.
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E. Taillandier & J. Liquier. 2001. Handbook of Vibrational Spectroscopy. Handbook of Vibrational Spectroscopy.
Chang-Beom Cho, Kap-Sun Jung, Jae Hyung Kim, Tae-Sub Cho, Ho G. Jang & Seog K. Kim. (2001) Binding mode of 4′,6-diamidino-2-phenylindole and ethidium to poly(dG)·poly(dC)·poly(dC)+ triplex and poly(dG)·poly(dC) duplex. Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 1517:2, pages 220-227.
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Frederic Geinguenaud, Jean Liquier, Maxim G. Brevnov, Olga V. Petrauskene, Yakov I. Alexeev, Elizaveta S. Gromova & Eliane Taillandier. (2000) Parallel Self-Associated Structures Formed by T,C-Rich Sequences at Acidic pH. Biochemistry 39:41, pages 12650-12658.
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Pedro Carmona & Marina Molina. (2000) Spectroscopic Characterization of the G*G·C Triplet in Triple Helix Structures. The Journal of Physical Chemistry B 104:31, pages 7496-7501.
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Barry D. Self & Dexter S. Moore. (1998) Nucleic Acid Vibrational Circular Dichroism, Absorption, and Linear Dichroism Spectra. II. A DeVoe Theory Approach. Biophysical Journal 74:5, pages 2249-2258.
Crossref
Shahla Mohammadi, Martine Perrée-Fauvet, Nohad Gresh, Karine Hillairet & Eliane Taillandier. (1998) Joint Molecular Modeling and Spectroscopic Studies of DNA Complexes of a Bis(arginyl) Conjugate of a Tricationic Porphyrin Designed to Target the Major Groove. Biochemistry 37:17, pages 6165-6178.
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Markus Tarköy, A. Kathryn Phipps, Peter Schultze & Juli Feigon. (1998) Solution Structure of an Intramolecular DNA Triplex Linked by Hexakis(ethylene glycol) Units:  d(AGAGAGAA-(EG) 6 -TTCTCTCT-(EG) 6 -TCTCTCTT) , . Biochemistry 37:17, pages 5810-5819.
Crossref
Munna Sarkar, Utz Dornberger, Eriks Rozners, Hartmut Fritzsche, Roger Strömberg & Astrid Gräslund. (1997) FTIR Spectroscopic Studies of Oligonucleotides That Model a Triple-Helical Domain in Self-Splicing Group I Introns. Biochemistry 36:49, pages 15463-15471.
Crossref
C. Dagneaux, H. Gousset, A. K. Shchyolkina, M. Ouali, R. Letellier, J. Liquier, V. L. Florentiev & E. Taillandier. (1996) Parallel and Antiparallel A*A-T Intramolecular Triple Helices. Nucleic Acids Research 24:22, pages 4506-4512.
Crossref
Ye Fang, Chunli Bai, Ying Wei, Youqi Tang, Shwu-Bin Lin & Lou-Sing Kan. (1995) Determination of the conformations of intramolecular DNA triple helices by FT-IR spectroscopy: effect of loop length. Journal of Molecular Structure: THEOCHEM 372:2-3, pages 241-247.
Crossref
Ye Fang, Chunli Bai, Ying Wei, Youqi Tang, Shwu-Bin Lin & Lou-Sing Kan. (1995) Determination of the conformations of intramolecular DNA triple helices by FT-IR spectroscopy: effect of loop length. Journal of Molecular Structure 372:2-3, pages 241-247.
Crossref
C Dagneaux, H Porumb, R Letellier, C Malvy & E Taillandier. (1995) Triple helix forming oligonucleotides used as drugs: an FTIR, Raman and molecular modeling study. Journal of Molecular Structure 347, pages 343-350.
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. 1995. Infrared and Raman Spectroscopy. Infrared and Raman Spectroscopy 711 764 .
Zhihua Huang, Lijiang Wang & Timothy A. Keiderling. 1995. Spectroscopy of Biological Molecules. Spectroscopy of Biological Molecules 321 322 .
H. Porumb, C. Dagneaux, R. Letellier, C. Malvy & E. Taillandier. (1994) Triple-helices targeted to the polypurine tract of a murine retrovirus. Gene 149:1, pages 101-107.
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Lijiang Wang, Petr Pancoska & Timothy A. Keiderling. (2002) Detection and Characterization of Triple-Helical Pyrimidine-Purine-Pyrimidine Nucleic Acids with Vibrational Circular Dichroism. Biochemistry 33:28, pages 8428-8435.
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Jean Liquier, Richard Letellier, Cecile Dagneaux, Mohammed Ouali, Francois Morvan, Bernard Raynier, Jean Louis Imbach & Eliane Taillandier. (2002) Triple helix formation by .alpha.-oligodeoxynucleotides: A vibrational spectroscopy and molecular modeling study. Biochemistry 32:40, pages 10591-10598.
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J. Liquier, C. Dagneaux & E. Taillandier. 1993. Fifth International Conference on the Spectroscopy of Biological Molecules. Fifth International Conference on the Spectroscopy of Biological Molecules 51 54 .

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