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Journal of Biomolecular Structure and Dynamics Volume 12, 1994 - Issue 2
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Original Articles

Investigation of Domain Motions in Bacteriophage T4 Lysozyme

Gregory E. Arnold Environmental Molecular Sciences Laboratory Pacific Northwest Laboratory, Richland, WA, 99352
,
John I. Manchester Environmental Molecular Sciences Laboratory Pacific Northwest Laboratory, Richland, WA, 99352
,
Benjamin D. Townsend Environmental Molecular Sciences Laboratory Pacific Northwest Laboratory, Richland, WA, 99352
&
Rick L. Ornstein Environmental Molecular Sciences Laboratory Pacific Northwest Laboratory, Richland, WA, 99352
Pages 457-474 | Received 06 May 1994, Published online: 21 May 2012

Citations (18)

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Neeti Sinha, Chung-Jung Tsai & Ruth Nussinov. (2001) Building Blocks, Hinge-Bending Motions and Protein Topology. Journal of Biomolecular Structure and Dynamics 19:3, pages 369-380.
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Articles from other publishers (17)

Fabiola De Marchi, Ivana Munitic, Lea Vidatic, Eliša Papić, Valentino Rački, Jerneja Nimac, Igor Jurak, Gabriela Novotni, Boris Rogelj, Vladimira Vuletic, Rajka M. Liscic, Jason R. Cannon, Emanuele Buratti, Letizia Mazzini & Silva Hecimovic. (2023) Overlapping Neuroimmune Mechanisms and Therapeutic Targets in Neurodegenerative Disorders. Biomedicines 11:10, pages 2793.
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Jia-Liang Chen, Yin Yang, Lin-Lin Zhang, Haobo Liang, Thomas Huber, Xun-Cheng Su & Gottfried Otting. (2016) Analysis of the solution conformations of T4 lysozyme by paramagnetic NMR spectroscopy. Physical Chemistry Chemical Physics 18:8, pages 5850-5859.
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Kannan Sankar, Jie Liu, Yuan Wang & Robert L. Jernigan. (2015) Distributions of experimental protein structures on coarse-grained free energy landscapes. The Journal of Chemical Physics 143:24.
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Wenjun Zheng & Paul Glenn. (2015) Probing the folded state and mechanical unfolding pathways of T4 lysozyme using all-atom and coarse-grained molecular simulation. The Journal of Chemical Physics 142:3, pages 035101.
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Yongki ChoiIssa S. MoodyPatrick C. SimsSteven R. HuntBrad L. CorsoIsrael PerezGregory A. WeissPhilip G. Collins. (2012) Single-Molecule Lysozyme Dynamics Monitored by an Electronic Circuit. Science 335:6066, pages 319-324.
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Michal Brylinski & Jeffrey Skolnick. (2007) What is the relationship between the global structures of apo and holo proteins?. Proteins: Structure, Function, and Bioinformatics 70:2, pages 363-377.
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Mark E. Tuckerman & Glenn J. Martyna. (1999) Understanding Modern Molecular Dynamics:  Techniques and Applications. The Journal of Physical Chemistry B 104:2, pages 159-178.
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B.L. de Groot, S. Hayward, D.M.F van Aalten, A. Amadei & H.J.C. Berendsen. (1998) Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data. Proteins: Structure, Function, and Genetics 31:2, pages 116-127.
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I. Bahar, B. Erman, T. Haliloglu & R. L. Jernigan. (1997) Efficient Characterization of Collective Motions and Interresidue Correlations in Proteins by Low-Resolution Simulations. Biochemistry 36:44, pages 13512-13523.
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Robert G. Tsushima, Ronald A. Li & Peter H. Backx. (1997) P-loop Flexibility in Na+ Channel Pores Revealed by Single- and Double-cysteine Replacements. The Journal of General Physiology 110:1, pages 59-72.
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Gregory E. Arnold & Rick L. Ornstein. (1997) Protein hinge bending as seen in molecular dynamics simulations of native and M61 mutant T4 lysozymes. Biopolymers 41:5, pages 533-544.
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Chandra S. Verma, Leo S.D. Caves, Roderick E. Hubbard & Gordon C.K. Roberts. (1997) Domain motions in dihydrofolate reductase: a molecular dynamics study. Journal of Molecular Biology 266:4, pages 776-796.
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Vladimir Maiorov & Ruben Abagyan. (1997) A new method for modeling large-scale rearrangements of protein domains. Proteins: Structure, Function, and Genetics 27:3, pages 410-424.
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Hassane S. Mchaourab, Kyoung Joon Oh, Celia J. Fang & Wayne L. Hubbell. (1997) Conformation of T4 Lysozyme in Solution. Hinge-Bending Motion and the Substrate-Induced Conformational Transition Studied by Site-Directed Spin Labeling. Biochemistry 36:2, pages 307-316.
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Terry M. Gray, Eric J. Arnoys, Stephen Blankespoor, Tim Born, Rebekah Jagar, Rebecca Everman, Darla Plowman, Angela Stair & Daisy Zhang. (2008) Destabilizing effect of proline substitutions in two helical regions of T4 lysozyme: Leucine 66 to proline and leucine 91 to proline. Protein Science 5:4, pages 742-751.
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Paul A. Rejto & Stephan T. Freer. (1996) Protein conformational substates from X-ray crystallography. Progress in Biophysics and Molecular Biology 66:2, pages 167-196.
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Mark D. Paulsen & Rick L. Ornstein. (2004) Dramatic differences in the motions of the mouth of open and closed cytochrome P450BM‐3 by molecular dynamics simulations. Proteins: Structure, Function, and Bioinformatics 21:3, pages 237-243.
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