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Journal of Biomolecular Structure and Dynamics Volume 16, 1998 - Issue 1
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Original Articles

Ion-RNA Interactions in the RNA Pseudoknot of a Ribosomal Frameshifting Site: Molecular Modeling Studies

Shu-Yun Le Laboratory of Experimental and Computational Biology, DBS, FCRDC, National Cancer Institute, NIH, Frederick, MD, 21701
,
Jih-H. Chen Frederick Biomedical Supercomputing Center, SAIC-NCIIFCRDC, P.O. Box B, Fresderick, MD, 21702
,
N. Pattabiraman Frederick Biomedical Supercomputing Center, SAIC-NCIIFCRDC, P.O. Box B, Fresderick, MD, 21702
&
Jacob V. Maizel Jr. Laboratory of Experimental and Computational Biology, DBS, FCRDC, National Cancer Institute, NIH, Frederick, MD, 21701
Pages 1-11 | Received 11 May 1998, Published online: 21 May 2012

Citations (10)

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Man Singh. (2007) Friccohenics of Continuum and Non‐Continuum Models for Liquid Flow Applied for Heteromolecular Interaction of DNA Bases and Sugars Estimated with Mansingh Equation. Journal of Dispersion Science and Technology 28:5, pages 737-748.
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Articles from other publishers (9)

Asmita Gupta & Manju Bansal. (2014) Local Structural and Environmental Factors Define the Efficiency of an RNA Pseudoknot Involved in Programmed Ribosomal Frameshift Process. The Journal of Physical Chemistry B 118:41, pages 11905-11920.
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Evelyn Mayaan, Adam Moser, Alexander D. MacKerellJrJr & Darrin M. York. (2007) CHARMM force field parameters for simulation of reactive intermediates in native and thio-substituted ribozymes. Journal of Computational Chemistry 28:2, pages 495-507.
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Ian Brierley & Francisco J. Dos Ramos. (2006) Programmed ribosomal frameshifting in HIV-1 and the SARS–CoV. Virus Research 119:1, pages 29-42.
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Eizadora T. Yu, Qingrong Zhang & Daniele Fabris. (2005) Untying the FIV Frameshifting Pseudoknot Structure by MS3D. Journal of Molecular Biology 345:1, pages 69-80.
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Arpita Yadav & Sanjeev Kumar Singh. (2004) Threshold interaction energy of NRTI's (2′-deoxy 3′-substituted nucleosidic analogs of reverse transcriptase inhibitors) to undergo competitive inhibition. Bioorganic & Medicinal Chemistry Letters 14:10, pages 2677-2680.
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Ian Brierley & Marijana Vidakovic. 2003. Viral Gastroenteritis. Viral Gastroenteritis 587 606 .
I. BRIERLEY & S. PENNELL. (2001) Structure and Function of the Stimulatory RNAs Involved in Programmed Eukaryotic -1 Ribosomal Frameshifting. Cold Spring Harbor Symposia on Quantitative Biology 66:0, pages 233-248.
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Jana Khandogin, Anguang Hu & Darrin M. York. (2000) Electronic structure properties of solvated biomolecules: A quantum approach for macromolecular characterization. Journal of Computational Chemistry 21:16, pages 1562-1571.
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Jan Liphardt, Sawsan Napthine, Harry Kontos & Ian Brierley. (1999) Evidence for an RNA pseudoknot loop-helix interaction essential for efficient −1 ribosomal frameshifting. Journal of Molecular Biology 288:3, pages 321-335.
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